Metam
ORF

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Transcript

ID CARD

MetamORF ID

145878

ID

ENSMUST00000029912

Name

Sdcbp-201

Strand

+

Biotype

protein_coding

Start-end positions

6365650-6396284

CDS Start-stop positions

6377092-6394564

CDS Relative positions

-

Sequences

Transcript sequence

TGC ...

Gene

ID

NCBI:53378

Aliases

ENSMUSG00000028249,
MDA-9, MGI:1337026, NCBI:53378,
OFF:Sdcbp, Sdcbp, Sycl,
syntenin-1


Chr 4

ORFs

33 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

56855 48

CTG ...

LIT ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF, R1E
166145 111

ATG ...

MLR ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1418 60

CTG ...

LKY ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, Liver
865 69

GTG ...

VRA ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF
59404 69

CTG ...

LPE ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF
160736 60

GTG ...

VKL ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF,
R1E
147858 81

TTG ...

LNG ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF
149734 99

ATG ...

MLE ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF,
R1E
1397 93

GTG ...

VTG ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, MEF
56113 33

GTG ...

VRS ...

Ribo-seq
GTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF, R1E
155049 33

ATG ...

MEK ...

Ribo-seq
ATG strong 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, R1E
59831 117

ATG ...

MTR ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
MEF
163196 93

GTG ...

VWS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
MEF, v6-5
1349 30

CTG ...

LEH ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, Liver
160182 69

CTG ...

LGL ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
MEF
150964 90

TTG ...

LQI ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
149543 96

CTG ...

LEF ...

Ribo-seq
CTG strong 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF,
R1E
59427 72

CTG ...

LLP ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF
897562 237

AGG ...

RAG ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
164663 81

CTG ...

LGL ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, MEF, R1E
1449 66

ATG ...

MKL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, Liver,
MEF
977 54

CTG ...

LIR ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Liver, MEF
163980 75

CTG ...

LWL ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Liver, MEF,
R1E
578 105

TTG ...

LGT ...

Ribo-seq
TTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Liver, MEF,
R1E
510994 51

GTG ...

VWS ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    sORF
    Upstream
B_cell, MEF
59760 120

GTG ...

VMT ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, Brain,
MEF
161479 87

TTG ...

LCG ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, Brain, MEF
509670 39

CTG ...

LQK ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell, MEF
161982 102

TTG ...

LQI ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF
145909 48

TTG ...

LFN ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Liver, MEF,
R1E
651 78

GTG ...

VKT ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, MEF,
R1E
160648 63

CTG ...

LWL ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
MEF, R1E
1324 51

GTG ...

VRA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, Liver

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5