Transcript 145739

Transcript

ID CARD

MetamORF ID

145739

ENSMUST00000124758

Name

Ptprf-203

Strand

Biotype

protein_coding

Start-end positions

118209010-118236016

CDS Start-stop positions

118209821-

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:19268

Aliases

AA591035,
ENSMUSG00000033295, LAR, LARS,
MGI:102695, NCBI:19268, OFF:Ptprf,
Ptprf, RPTP-LAR

Chr 4

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1225211	78	AGG ...	RGL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
1230708	186	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
551518	81	ATG ...	MCS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	3T3
145738	48	TTG ...	LTL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF	Brain
1229761	54	AGG ...	RTS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
1229967	33	ACG ...	TRR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF	E14
1231869	30	ATG ...	MAT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1228801	84	ATC ...	IYH ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF	E14
1231649	57	ATA ...	ILS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	E14
1227260	183	CTG ...	LCM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
1231456	177	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1230082	111	ATG ...	MCG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1230804	63	AGG ...	RSG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1228405	90	ATT ...	IVP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1232566	285	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
156404	72	CTG ...	LTW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
1231324	120	AGG ...	RSP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1228547	141	ACG ...	TDR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	E14
1232697	69	AGG ...	RSG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
547412	72	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
1224807	129	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14

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