Transcript 1409 | MetamORF

Transcript

ID CARD

MetamORF ID

1409

ENSMUST00000129339

Name

Eef1b2-204

Strand

Biotype

protein_coding

Start-end positions

63176825-63180486

CDS Start-stop positions

63177212-63179612

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:55949

Aliases

2810017J07Rik,
Eef1b, Eef1b2, ENSMUSG00000025967,
MGI:1929520, NCBI:55949, OFF:Eef1b2

Chr 1

ORFs

46 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
829925	69	ATG ...	MTT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
1217064	168	ATT ...	ITW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
39071	108	CTG ...	LGP ...	Ribo-seq	CTG	strong	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
9808	81	ATG ...	MLR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
45703	33	ATG ...	MKK ...	Ribo-seq	ATG		14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
292467	84	GTG ...	VRK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
47404	93	CTG ...	LVH ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
1215201	57	AAA ...	KAC ...	Ribo-seq	AAA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
780925	111	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1730592	48	GTG ...	VCP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
34793	84	CTG ...	LAA ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC
768364	96	ATG ...	MPY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
414629	135	ACG ...	TCH ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
485246	48	TTG ...	LHS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC
770916	33	CTG ...	LQL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14
48130	78	CTG ...	LTC ...	Ribo-seq	CTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
499622	192	CTG ...	LPA ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Spleen_B_cell
782723	51	TTG ...	LHS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
304408	123	CTG ...	LVH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
33138	51	GTG ...	VGP ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, Liver, Testis, v6-5
1495850	81	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	NSC
1408	66	ATG ...	MPY ...	Ribo-seq	ATG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
10150	93	GTG ...	VEL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
50780	81	CTG ...	LLT ...	Ribo-seq	CTG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
897492	48	ATC ...	ITS ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF
789591	42	ATG ...	MSP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1207806	102	AAG ...	KQF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1683738	225	TTG ...	LTD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
940220	78	ATC ...	ITS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
17634	126	TTG ...	LER ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF Upstream	3T3, Brain, E14, Testis, v6-5
752648	72	ATG ...	MMT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
7591	87	CTG ...	LQM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
20709	135	TTG ...	LKQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC
1506958	75	TTG ...	LRT ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	NSC
49530	144	TTG ...	LRG ...	Ribo-seq	TTG		17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
942851	72	ATT ...	IRR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
791998	108	CTG ...	LTC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
29015	105	ATG ...	MPP ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, Brain, E14, Liver, R1E, Testis, v6-5
1221470	123	AAG ...	KQT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1682410	243	TTG ...	LFS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
45046	105	TTG ...	LKQ ...	Ribo-seq	TTG		16	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1680829	216	ATG ...	MGY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
796681	60	TTG ...	LIS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
1215222	51	ATA ...	IIT ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF
414470	141	AGG ...	RGT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
943773	66	ACG ...	TYS ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC

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