Transcript 14062 | MetamORF

Transcript

ID CARD

MetamORF ID

14062

ENSMUST00000018965

Name

Avpi1-201

Strand

Biotype

protein_coding

Start-end positions

42123273-42129059

CDS Start-stop positions

42123689-42125016

CDS Relative positions

Sequences

Transcript sequence

GAT ...

Genome browsers

UCSC

Gene

NCBI:69534

Aliases

2310008N12Rik,
AA410041, Avpi1, ENSMUSG00000018821,
esu, MGI:1916784, mVIT32,
NCBI:69534, OFF:Avpi1, VIT32

Chr 19

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
14061	75	ATG ...	MLS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, Skin_tumor
402419	45	CTG ...	LRS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E
401270	120	CTG ...	LTR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, Liver, MEF
718570	51	TTG ...	LAV ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, MEF, v6-5
407807	141	CTG ...	LTP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, Liver, MEF
718788	114	CTG ...	LLK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	3T3
401288	75	GTG ...	VLE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	Brain
718819	30	TTG ...	LAR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, v6-5
14266	72	CTG ...	LSW ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Skin_tumor
408007	75	GTG ...	VIQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E
404052	33	CTG ...	LGV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, R1E
404846	66	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E
410451	84	GTG ...	VAV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, MEF, R1E
1363208	69	GTG ...	VAG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
92088	78	GTG ...	VIQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, R1E
406044	96	CTG ...	LGT ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain
489733	30	CTG ...	LPR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, R1E
726326	48	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E
404525	81	GTG ...	VAV ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Brain, C2C12, MEF, R1E
719706	87	CTG ...	LRN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	3T3
725050	69	GTG ...	VAR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, R1E
719219	111	TTG ...	LKG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	3T3, BMDC
722723	36	GTG ...	VGT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
718619	129	GTG ...	VTE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	3T3
406636	93	CTG ...	LPT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
406926	156	CTG ...	LVL ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, Brain, E14, Liver, MEF
721543	39	TTG ...	LAK ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, v6-5

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