Metam
ORF

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Transcript

ID CARD

MetamORF ID

1398

ID

ENSMUST00000103008

Name

Sdcbp-202

Strand

+

Biotype

protein_coding

Start-end positions

6365677-6395655

CDS Start-stop positions

6377092-6394564

CDS Relative positions

-

Sequences

Transcript sequence

GGT ...

Gene

ID

NCBI:53378

Aliases

ENSMUSG00000028249,
MDA-9, MGI:1337026, NCBI:53378,
OFF:Sdcbp, Sdcbp, Sycl,
syntenin-1


Chr 4

ORFs

37 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

160736 60

GTG ...

VKL ...

Ribo-seq
GTG weak 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
896460 87

TTG ...

LFW ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
56113 33

GTG ...

VRS ...

Ribo-seq
GTG weak 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis
1397 93

GTG ...

VTG ...

Ribo-seq
GTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, NSC, Skin_tumor,
Spleen_B_cell
160648 63

CTG ...

LWL ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Neutrophil, NSC, v6-5
155049 33

ATG ...

MEK ...

Ribo-seq
ATG strong 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
v6-5
59760 120

GTG ...

VMT ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, MEF, Neutrophil,
Testis
163196 93

GTG ...

VWS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
BMDC, MEF, NSC,
Spleen_B_cell
977 54

CTG ...

LIR ...

Ribo-seq
CTG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
NSC, Spleen_B_cell, v6-5
865 69

GTG ...

VRA ...

Ribo-seq
GTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell
161982 102

TTG ...

LQI ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC
59831 117

ATG ...

MTR ...

Ribo-seq
ATG 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil, Spleen_B_cell, Testis
145909 48

TTG ...

LFN ...

Ribo-seq
TTG weak 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
NSC, Spleen_B_cell
56855 48

CTG ...

LIT ...

Ribo-seq
CTG weak 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis
651 78

GTG ...

VKT ...

Ribo-seq
GTG moderate 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, v6-5
151895 99

ATG ...

MLR ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
Neutrophil, NSC
164663 81

CTG ...

LGL ...

Ribo-seq
CTG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, Neutrophil,
NSC, v6-5
160182 69

CTG ...

LGL ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
v6-5
515313 57

CTG ...

LKY ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
514435 63

ATG ...

MKL ...

Ribo-seq
ATG 9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC, Spleen_B_cell,
v6-5
1464982 42

ATG ...

MLA ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC
150964 90

TTG ...

LQI ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC
161479 87

TTG ...

LCG ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell
977253 120

CTG ...

LLI ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain
1465824 48

GTG ...

VDM ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
899111 111

CTG ...

LPI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
166145 111

ATG ...

MLR ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
Neutrophil, NSC
578 105

TTG ...

LGT ...

Ribo-seq
TTG strong 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
Neutrophil, NSC, Spleen_B_cell,
v6-5
59404 69

CTG ...

LPE ...

Ribo-seq
CTG weak 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis
147858 81

TTG ...

LNG ...

Ribo-seq
TTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell
1449 66

ATG ...

MKL ...

Ribo-seq
ATG 1 Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
515459 48

GTG ...

VRA ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, MEF,
Neutrophil, NSC, Spleen_B_cell
163980 75

CTG ...

LWL ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Liver,
MEF, Neutrophil, NSC,
v6-5
509670 39

CTG ...

LQK ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, MEF, Neutrophil,
NSC, v6-5
149734 99

ATG ...

MLE ...

Ribo-seq
ATG moderate 7 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Glioma, Liver,
MEF, MESC, Neutrophil,
NSC, Spleen_B_cell
149543 96

CTG ...

LEF ...

Ribo-seq
CTG strong 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF, Neutrophil,
NSC, Spleen_B_cell, v6-5
59427 72

CTG ...

LLP ...

Ribo-seq
CTG moderate 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
MEF, Neutrophil, NSC,
Spleen_B_cell, Testis

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5