Transcript 139577

Transcript

ID CARD

MetamORF ID

139577

ENSMUST00000111318

Name

Ndufs2-202

Strand

Biotype

protein_coding

Start-end positions

171234853-171247122

CDS Start-stop positions

171235050-171247088

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:226646

Aliases

CI-49kD,
ENSMUSG00000013593, MGI:2385112, NCBI:226646,
Ndufs2, OFF:Ndufs2

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
35523	39	ATG ...	MTP ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1213334	69	ATG ...	MSG ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
118096	129	GTG ...	VER ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, BMDC, Liver
350379	60	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Liver
42662	120	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	CDS sORF	3T3, B_cell, BMDC, Spleen_B_cell
740469	135	TTG ...	LGY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
120690	57	CTG ...	LVW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1216839	201	ATA ...	IQR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
139576	63	TTG ...	LST ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain
537580	123	ATG ...	MTF ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
744471	150	TTG ...	LDR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
814149	120	GTG ...	VLG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, Neutrophil
149649	108	GTG ...	VTL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver
43292	102	CTG ...	LQA ...	Ribo-seq	CTG		4	sORFs_org_Mouse	CDS sORF	3T3, B_cell, BMDC, Spleen_B_cell
44886	210	ATG ...	MGH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	CDS sORF	B_cell
43462	117	TTG ...	LPP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	CDS sORF	3T3, B_cell, BMDC, Spleen_B_cell
661925	81	ATG ...	MGR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Liver, MEF
854211	36	TTG ...	LGP ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
807471	96	TTG ...	LNG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver
736320	114	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
744675	96	ATG ...	MFL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
732423	99	TTG ...	LMF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
671496	66	ATG ...	MSG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, NSC
819367	69	CTG ...	LSC ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Liver, Neutrophil
1220614	57	CTG ...	LGP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
304109	81	TTG ...	LGY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, Liver

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