Transcript 13955 | MetamORF

Transcript

ID CARD

MetamORF ID

13955

ENSMUST00000145300

Name

Prdx5-202

Strand

Biotype

retained_intron

Start-end positions

6906697-6909978

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:54683

Aliases

AOEB166,
AOPP, ENSMUSG00000024953, MGI:1859821,
NCBI:54683, OFF:Prdx5, PLP,
Pmp20, Prdx5, Prdx6,
PrxV

Chr 19

ORFs

55 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
14226	42	TTG ...	LKS ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Skin_tumor, Testis
42935	153	CTG ...	LFK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
402301	207	CTG ...	LSL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain
41641	285	CTG ...	LWA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
42187	42	ATG ...	MQV ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Brain, E14, R1E, Testis
14428	69	CTG ...	LNV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E, Skin_tumor, Testis
14087	153	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
41499	210	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
41854	168	GTG ...	VNL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
1203475	117	AAG ...	KSR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
42119	54	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
41389	81	GTG ...	VIE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Testis
14525	201	GTG ...	VEV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Skin_tumor, Testis
14317	51	TTG ...	LDD ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
1158350	60	TTG ...	LRL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
1867715	99	CTG ...	LRY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
408679	30	CTG ...	LTP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
43101	258	CTG ...	LRQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Testis
408200	51	ATG ...	MPF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF
488461	36	GTG ...	VAE ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	BMDC
404704	201	CTG ...	LHP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain
14349	96	GTG ...	VGV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Skin_tumor
408047	231	GTG ...	VGR ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain
14076	39	TTG ...	LVS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
401795	60	CTG ...	LQP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1200759	84	AAG ...	KAY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
14066	51	GTG ...	VFC ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Skin_tumor
14424	135	CTG ...	LKA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
403842	90	GTG ...	VHR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
14262	36	GTG ...	VSL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor, Testis
14125	39	ATG ...	MIL ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor
14190	78	GTG ...	VKA ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, MEF, R1E, Skin_tumor, Testis
401756	186	GTG ...	VGR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain
1458267	63	TTG ...	LTF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
402250	87	CTG ...	LFY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
14041	162	CTG ...	LGF ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Skin_tumor
14174	33	CTG ...	LGH ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Skin_tumor
408018	30	CTG ...	LGL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF
42485	60	CTG ...	LKR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, E14, R1E, Testis, v6-5
41753	114	GTG ...	VVA ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Testis
14196	222	GTG ...	VGD ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Skin_tumor, Testis
14224	63	GTG ...	VEP ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E, Skin_tumor, Testis
14455	96	GTG ...	VID ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, MEF, R1E, Skin_tumor, Testis
1159468	39	CTG ...	LFA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
405832	276	GTG ...	VRH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
407630	99	CTG ...	LCS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14
41777	177	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, Testis
42109	111	GTG ...	VAC ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Testis
14043	42	TTG ...	LES ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Skin_tumor
13983	69	CTG ...	LFP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, MEF, Skin_tumor
13981	102	CTG ...	LSV ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, Skin_tumor, Testis
401722	93	TTG ...	LRL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5
14353	165	CTG ...	LPG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Skin_tumor, Testis
14291	162	TTG ...	LAE ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Skin_tumor, Testis
13954	30	CTG ...	LAP ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E, Skin_tumor, Testis

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