Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

13917

ID

ENSMUST00000026243

Name

Mgea5-201

Strand

-

Biotype

protein_coding

Start-end positions

45750261-45783520

CDS Start-stop positions

45752144-45783130

CDS Relative positions

-

Sequences

Transcript sequence

GCA ...

Gene

ID

NCBI:76055

Aliases

ENSMUSG00000025220,
Hy5, Mgea5, MGI:1932139,
NCBI:76055, Ncoat, OFF:Oga,
Oga


Chr 19

ORFs

141 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1159354 30

ATG ...

MKM ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, v6-5
410690 132

CTG ...

LRP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1204778 171

ATA ...

IIC ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1158454 51

GTG ...

VRS ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC,
v6-5
410374 177

TTG ...

LTI ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
403476 57

TTG ...

LKL ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
1159893 198

TTG ...

LLC ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
41507 66

ATG ...

MIR ...

Ribo-seq
ATG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
NSC, Spleen_B_cell, Testis
409228 60

GTG ...

VSL ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, v6-5
805106 300

CTG ...

LTK ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
B_cell
490380 63

ATG ...

MMM ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Spleen_B_cell,
v6-5
405614 36

ATG ...

MIK ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC, NSC
804574 138

CTG ...

LLR ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
B_cell
405927 72

ATG ...

MRN ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC
490347 150

TTG ...

LAQ ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, E14,
Spleen_B_cell
963621 48

ATA ...

IPS ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
404001 57

CTG ...

LWV ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
v6-5
410834 102

CTG ...

LEL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, NSC
409965 66

ATG ...

MED ...

Ribo-seq
ATG 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, Glioma,
Liver, MEF, MESC,
v6-5
490167 60

ATG ...

MME ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Spleen_B_cell
723923 39

TTG ...

LKK ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
410509 45

GTG ...

VLS ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
489201 72

ATG ...

MSK ...

Ribo-seq
ATG weak 7 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, Spleen_B_cell
410739 78

ATG ...

MLQ ...

Ribo-seq
ATG 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Glioma, Liver, MEF,
MESC, NSC, Spleen_B_cell
1204829 147

AGG ...

RTY ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
409424 36

GTG ...

VST ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
1364658 111

TTG ...

LHM ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14
487352 30

TTG ...

LHT ...

Ribo-seq
TTG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF,
Spleen_B_cell, v6-5
487813 57

ATG ...

MEW ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Spleen_B_cell
405104 66

GTG ...

VCT ...

Ribo-seq
GTG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, NSC, v6-5
727418 162

GTG ...

VQQ ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
489393 168

TTG ...

LQG ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, Spleen_B_cell
1201909 54

ATG ...

MKS ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC
719042 51

CTG ...

LSG ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
v6-5
13916 36

CTG ...

LRL ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, Skin_tumor, v6-5
407112 42

TTG ...

LME ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
962778 45

ATA ...

IPS ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1544707 156

TTG ...

LTI ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
403818 39

TTG ...

LRL ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
410404 117

GTG ...

VRS ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
NSC, v6-5
1203147 39

AGG ...

RSS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
408799 186

TTG ...

LMI ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
489516 159

GTG ...

VGE ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, Neutrophil,
Spleen_B_cell
491865 42

GTG ...

VAA ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, MEF, Spleen_B_cell,
v6-5
1545362 165

TTG ...

LMI ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
402140 78

ATG ...

MLM ...

Ribo-seq
ATG weak 9 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC, Spleen_B_cell
489684 30

GTG ...

VTK ...

Ribo-seq
GTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, Spleen_B_cell,
v6-5
1203332 45

AAG ...

KHD ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
408969 123

CTG ...

LWV ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
NSC, v6-5
408228 45

TTG ...

LWL ...

Ribo-seq
TTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC,
R1E, v6-5
407952 39

ATG ...

MTC ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, Spleen_B_cell
1203069 48

AAG ...

KNG ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1202933 93

AAG ...

KRK ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1364019 105

ATG ...

MHK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14
1204010 60

AAG ...

KKF ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
408747 129

CTG ...

LTC ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, v6-5
402323 42

TTG ...

LSV ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Spleen_B_cell
1157988 42

TTG ...

LPY ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
407038 33

CTG ...

LMF ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
1203586 69

ATT ...

IMI ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
407875 51

TTG ...

LVQ ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, Spleen_B_cell, v6-5
488075 60

ATG ...

MKA ...

Ribo-seq
ATG moderate 7 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Glioma, Liver, MEF,
MESC, Spleen_B_cell
405954 60

GTG ...

VPT ...

Ribo-seq
GTG moderate 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, Spleen_B_cell
488125 111

GTG ...

VED ...

Ribo-seq
GTG strong 3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, Spleen_B_cell
1201195 39

AAG ...

KKK ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
725088 33

GTG ...

VTK ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
402133 45

GTG ...

VAL ...

Ribo-seq
GTG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
1201136 156

ATA ...

IRR ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
402313 36

CTG ...

LEL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, v6-5
726870 132

TTG ...

LHM ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
724148 30

GTG ...

VKT ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E
721533 33

ATG ...

MKS ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1202038 57

ATA ...

IWW ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
725314 36

ATG ...

MVT ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Glioma, Liver,
MEF, MESC
1201874 150

ATA ...

IIC ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
721964 45

CTG ...

LDS ...

Ribo-seq
CTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
v6-5
1202858 69

AGG ...

RNP ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1202769 147

AGG ...

RTY ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1158440 63

GTG ...

VCS ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
405774 129

CTG ...

LTC ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, v6-5
405947 39

ATG ...

MEQ ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC
1204436 57

AGC ...

SVC ...

Ribo-seq
AGC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
488219 36

TTG ...

LAR ...

Ribo-seq
TTG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
MEF, NSC, Spleen_B_cell,
v6-5
491326 33

TTG ...

LAR ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
MEF, NSC, Spleen_B_cell,
v6-5
720859 33

TTG ...

LPP ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
723973 69

TTG ...

LFQ ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E
1201847 108

ACG ...

TST ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1545489 141

GTG ...

VQQ ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
1544705 162

ATG ...

MIL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain
408783 81

CTG ...

LSG ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, v6-5
723484 33

TTG ...

LGY ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
720923 30

ATG ...

MFS ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
1204783 93

AAG ...

KER ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
722262 36

CTG ...

LTV ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, R1E
488052 96

CTG ...

LTW ...

Ribo-seq
CTG weak 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Spleen_B_cell,
v6-5
410956 66

ATG ...

MTT ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, NSC,
Spleen_B_cell
403939 63

GTG ...

VNL ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
406812 42

GTG ...

VAA ...

Ribo-seq
GTG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, E14, MEF,
Spleen_B_cell, v6-5
14335 30

TTG ...

LLK ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, Skin_tumor,
v6-5
960859 60

AGG ...

RKI ...

Ribo-seq
AGG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
492112 60

ATG ...

MMM ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Spleen_B_cell, v6-5
1160099 105

ATG ...

MKF ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
405925 39

TTG ...

LET ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
401574 39

ATG ...

MGI ...

Ribo-seq
ATG strong 8 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC
487443 57

CTG ...

LPR ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell
1202551 33

AAG ...

KLH ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
726404 213

TTG ...

LGA ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
405843 30

ATG ...

MIS ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14
1200864 93

AAG ...

KER ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
402740 51

GTG ...

VTK ...

Ribo-seq
GTG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Spleen_B_cell
401292 36

GTG ...

VST ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Spleen_B_cell
721118 30

GTG ...

VSL ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
409795 183

ATG ...

MIL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, v6-5
962293 87

ATA ...

ITF ...

Ribo-seq
ATA moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
402563 57

GTG ...

VGH ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, NSC,
v6-5
403873 48

TTG ...

LCQ ...

Ribo-seq
TTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Spleen_B_cell
404385 48

CTG ...

LLS ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, NSC, v6-5
410817 42

TTG ...

LSV ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain
41514 72

ATG ...

MIM ...

Ribo-seq
ATG weak 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, Spleen_B_cell,
Testis
1158213 192

TTG ...

LGA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
410478 126

ATG ...

MHK ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
402805 45

GTG ...

VLS ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, MEF, Spleen_B_cell
1201913 63

ATC ...

IRR ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
487361 141

CTG ...

LSP ...

Ribo-seq
CTG weak 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Spleen_B_cell, v6-5
1200901 108

AAG ...

KTA ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
491677 57

ATG ...

MME ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Spleen_B_cell, v6-5
1202046 54

AAG ...

KRS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
488248 72

GTG ...

VET ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
Spleen_B_cell
1200642 54

ATC ...

IHR ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1204760 108

ACG ...

TST ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1203245 42

AAG ...

KFI ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1158488 60

CTG ...

LWH ...

Ribo-seq
CTG moderate 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
NSC, v6-5
804892 39

CTG ...

LPP ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell
409153 84

GTG ...

VSW ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
MEF, v6-5
408751 96

TTG ...

LRC ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
NSC
1204548 54

ATA ...

IGC ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1205042 69

AGG ...

RSS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
491235 54

ATG ...

MEW ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, E14,
Spleen_B_cell, v6-5
403079 33

ATG ...

MVT ...

Ribo-seq
ATG 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
MEF, NSC, Spleen_B_cell,
v6-5
1205362 57

AAG ...

KRS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
491547 51

TTG ...

LVQ ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, Spleen_B_cell,
v6-5

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5