Transcript 139015

Transcript

ID CARD

MetamORF ID

139015

ENSMUST00000128441

Name

Gar1-203

Strand

Biotype

processed_transcript

Start-end positions

129825571-129831360

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:68147

Aliases

AA409823,
AI326794, C430047J18Rik, ENSMUSG00000028010,
Gar1, MGI:1930948, NCBI:68147,
Nola1, OFF:Gar1

Chr 3

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
139014	96	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
140317	138	GTG ...	VCK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
818489	141	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
53211	267	GTG ...	VEA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
53628	246	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
52741	135	CTG ...	LQR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
1218484	57	AAG ...	KSG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1171630	42	ATG ...	MRY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
817736	108	GTG ...	VPY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
51930	270	GTG ...	VVE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
747420	84	ATG ...	MYH ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
1219309	90	AGG ...	RTS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
506173	69	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
820290	123	CTG ...	LPR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
52825	144	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
820335	60	TTG ...	LSE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
505796	75	GTG ...	VKM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1220553	48	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1220501	81	ATC ...	IPV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
507290	168	CTG ...	LCA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	B_cell
1221238	45	ATA ...	IFG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
506679	81	CTG ...	LVT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	B_cell
817954	81	GTG ...	VTG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1218908	78	AGG ...	RWR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1222240	129	AGG ...	RFL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1219214	156	AGG ...	RLQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1218844	132	CTG ...	LVR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
819534	54	GTG ...	VDE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, E14
506788	171	GTG ...	VLC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	B_cell

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