Transcript 136162

Transcript

ID CARD

MetamORF ID

136162

ENSMUST00000186287

Name

Stk25-206

Strand

Biotype

protein_coding

Start-end positions

93627132-93658659

CDS Start-stop positions

-93635327

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:59041

Aliases

1500019J11Rik,
AU018434, C86992, ENSMUSG00000026277,
MGI:1891699, NCBI:59041, OFF:Stk25,
Ste20-like, Stk25, Ysk1

Chr 1

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
752370	156	TTG ...	LTE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3
136161	159	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
46381	279	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
685751	57	CTG ...	LCS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	R1E
33047	42	GTG ...	VTV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	R1E
32798	168	TTG ...	LGR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain, R1E
31008	183	TTG ...	LAK ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	sORF	Brain, R1E
38534	81	TTG ...	LRT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Liver, R1E
65422	87	ATG ...	MKL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	Liver, R1E
31668	192	TTG ...	LTA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	R1E
91115	108	TTG ...	LTW ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	Brain, R1E
32029	222	GTG ...	VWT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	R1E

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