Transcript 1360942

Transcript

ID CARD

MetamORF ID

1360942

ENSMUST00000128464

Name

Dsc2-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

20031479-20059509

CDS Start-stop positions

20048388-20059252

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:13506

Aliases

AW228162,
Dsc2, ENSMUSG00000024331, MGI:103221,
NCBI:13506, OFF:Dsc2

Chr 18

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1361125	36	TTG ...	LGP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1362195	192	GTG ...	VEE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1360947	174	CTG ...	LDE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1361995	129	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1361002	162	TTG ...	LRL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1361791	198	GTG ...	VGE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1361939	144	CTG ...	LRY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1361330	201	GTG ...	VTS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1362067	249	CTG ...	LMD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1361079	171	GTG ...	VEI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1361664	213	CTG ...	LSD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1361104	153	TTG ...	LLI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1360941	105	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1361858	96	TTG ...	LKG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1361524	153	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14

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