Transcript 13468 | MetamORF

Transcript

ID CARD

MetamORF ID

13468

ENSMUST00000115735

Name

Paip2-203

Strand

Biotype

protein_coding

Start-end positions

35598649-35617183

CDS Start-stop positions

35610897-35616255

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:67869

Aliases

2310050K10Rik,
AU045972, ENSMUSG00000037058, MGI:1915119,
NCBI:67869, OFF:Paip2, Paip2

Chr 18

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1414534	45	GTG ...	VPE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver
399701	54	TTG ...	LLS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, v6-5
13599	42	TTG ...	LLS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Skin_tumor
396955	60	ATG ...	MVY ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver
39616	153	TTG ...	LNA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver
398746	81	CTG ...	LWR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain
39466	66	CTG ...	LWR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Brain, Liver
39803	111	ATG ...	MNG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver
40542	33	GTG ...	VMA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
486119	105	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
39650	30	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
40974	60	ATG ...	MTL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, v6-5
400112	69	ATG ...	MKR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
41034	165	TTG ...	LNA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Liver
1865538	42	ATG ...	MGE ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Downstream sORF	R1E
484620	69	TTG ...	LAT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
400097	42	ATG ...	MAL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, v6-5
13467	39	CTG ...	LFP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver, Skin_tumor
398859	45	GTG ...	VMA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, v6-5
484686	99	GTG ...	VEI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
1575551	141	TTG ...	LAT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
41131	123	ATG ...	MNG ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, Liver, NSC, v6-5
40775	48	ATG ...	MTL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
400264	51	TTG ...	LQS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, Liver

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