Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

13282

ID

ENSMUST00000042345

Name

Ctnna1-201

Strand

+

Biotype

protein_coding

Start-end positions

35118888-35254773

CDS Start-stop positions

35152603-35253892

CDS Relative positions

-

Sequences

Transcript sequence

ATT ...

Gene

ID

NCBI:12385

Aliases

2010010M04Rik,
AA517462, AI988031, Catna1,
Ctnna1, ENSMUSG00000037815, MGI:88274,
NCBI:12385, OFF:Ctnna1


Chr 18

ORFs

130 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

714647 48

GTG ...

VAV ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
717257 84

CTG ...

LPS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
1197115 234

AAG ...

KRT ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
717057 114

ATG ...

MQP ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
NSC
1155733 36

CTG ...

LGS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
393906 66

ATG ...

MSS ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Liver, MEF,
R1E
1198530 48

ACG ...

TWL ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
714298 87

ATG ...

MTV ...

Ribo-seq
ATG 13 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
R1E, v6-5
1197772 279

ATG ...

MLH ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
958124 51

AGG ...

RMR ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
1196820 117

AGG ...

RTC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1196512 75

ACG ...

TTL ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
857741 225

GTG ...

VLP ...

Ribo-seq
GTG 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, R1E,
v6-5
715777 48

TTG ...

LQK ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
717453 108

TTG ...

LWQ ...

Ribo-seq
TTG 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
R1E, v6-5
717230 90

ATG ...

MML ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
13406 57

CTG ...

LKT ...

Ribo-seq
CTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Liver, MEF, NSC,
Skin_tumor
958230 36

TTG ...

LKD ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, MEF
959552 48

TTG ...

LKD ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
13898 147

CTG ...

LTH ...

Ribo-seq
CTG 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Liver, MEF, R1E,
Skin_tumor, v6-5
1196538 132

AGG ...

RSK ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
856890 45

TTG ...

LPT ...

Ribo-seq
TTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver, MEF,
v6-5
398620 72

ATG ...

MRM ...

Ribo-seq
ATG weak 9 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC, R1E
411373 51

ATG ...

MFE ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, C2C12, E14
716301 69

TTG ...

LWQ ...

Ribo-seq
TTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
R1E, v6-5
716539 93

CTG ...

LLN ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
981053 84

ATG ...

MQA ...

Ribo-seq
ATG moderate 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Glioma,
Liver, MEF, MESC,
R1E
717940 87

ATG ...

MLP ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
958474 69

ATA ...

IPE ...

Ribo-seq
ATA weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
715445 120

GTG ...

VIR ...

Ribo-seq
GTG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
NSC, R1E, v6-5
1197072 84

ATG ...

MLF ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, R1E
395189 54

CTG ...

LSW ...

Ribo-seq
CTG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, R1E, v6-5
13494 69

CTG ...

LTS ...

Ribo-seq
CTG moderate 13 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Liver, MEF, NSC,
R1E, Skin_tumor, v6-5
712702 90

GTG ...

VLL ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver
393515 111

CTG ...

LWK ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
R1E
958428 48

ATC ...

IRF ...

Ribo-seq
ATC weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
716411 78

CTG ...

LHQ ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
R1E
713644 63

CTG ...

LPS ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
MEF, NSC, R1E,
v6-5
1198900 48

AAG ...

KLR ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
13508 108

CTG ...

LTH ...

Ribo-seq
CTG 13 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
R1E, Skin_tumor, v6-5
1198990 114

AGG ...

RPS ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
395741 57

ATG ...

MRK ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, v6-5
1154786 39

CTG ...

LLK ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
715301 66

ATG ...

MLP ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
R1E, v6-5
714148 45

ATG ...

MSE ...

Ribo-seq
ATG weak 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
E14, Glioma, Liver,
MEF, MESC, NSC
857216 114

TTG ...

LQN ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver, MEF, NSC,
v6-5
715881 78

CTG ...

LRI ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
717220 129

GTG ...

VMT ...

Ribo-seq
GTG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Liver, MEF, R1E,
v6-5
1632467 51

CTG ...

LLK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1199543 72

AGG ...

RTC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
717232 69

GTG ...

VAV ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF
714116 99

CTG ...

LHL ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
958486 117

AAG ...

KQL ...

Ribo-seq
AAG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
959782 63

CTG ...

LKY ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF
1196417 72

ATT ...

ISW ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
717923 99

CTG ...

LHQ ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
1197637 156

ATA ...

IVK ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
716427 108

CTG ...

LQL ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
R1E, v6-5
1199735 135

AGG ...

RTC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
715086 63

CTG ...

LHP ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Liver,
NSC, v6-5
856789 36

CTG ...

LML ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Liver
1198715 123

AAG ...

KQR ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
13281 42

CTG ...

LDV ...

Ribo-seq
CTG strong 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, MEF, Skin_tumor
396415 78

TTG ...

LKL ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF, v6-5
1414468 66

GTG ...

VHD ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
1198450 66

ATA ...

ILH ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
856807 42

GTG ...

VAM ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
13350 69

CTG ...

LPR ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Brain, E14,
Liver, MEF, R1E,
Skin_tumor, v6-5
13502 57

TTG ...

LRR ...

Ribo-seq
TTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, Brain,
E14, Liver, MEF,
R1E, Skin_tumor, v6-5
857187 30

TTG ...

LQP ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
712768 81

ATG ...

MFQ ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
1155488 39

CTG ...

LTW ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, NSC, v6-5
1632241 63

GTG ...

VAE ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1199051 42

AGG ...

RLY ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
712759 84

TTG ...

LLS ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver
715178 90

GTG ...

VMT ...

Ribo-seq
GTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
R1E, v6-5
857691 222

CTG ...

LPR ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, R1E,
v6-5
1196514 84

AGG ...

RLL ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
856839 69

ATG ...

MLK ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
40827 48

TTG ...

LAP ...

Ribo-seq
TTG 9 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC, E14, MEF,
Neutrophil, R1E, Testis,
v6-5
1196353 48

ATC ...

IQD ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
959335 84

AAG ...

KQL ...

Ribo-seq
AAG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
716780 69

ATG ...

MML ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
R1E, v6-5
958578 45

AGG ...

RQH ...

Ribo-seq
AGG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
857507 210

TTG ...

LRR ...

Ribo-seq
TTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, MEF, R1E,
v6-5
1198752 159

AGG ...

RSR ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1200195 81

AGG ...

RLY ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
959253 66

ACG ...

TSQ ...

Ribo-seq
ACG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
857210 48

ATG ...

MTV ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
1155806 39

CTG ...

LLG ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
13363 72

GTG ...

VLP ...

Ribo-seq
GTG 12 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, BMDC, E14,
Liver, MEF, R1E,
Skin_tumor, v6-5
959585 72

AAG ...

KSR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
715244 90

TTG ...

LNK ...

Ribo-seq
TTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1196956 84

AGG ...

RSW ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
715585 93

ATG ...

MQP ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
NSC, R1E, v6-5
1197998 63

AGG ...

RSA ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1198930 105

AGG ...

RWP ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1197982 33

AGG ...

RTC ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
398558 48

ATG ...

MRR ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Glioma, Liver,
MEF, MESC
958730 51

AGG ...

RRD ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1197630 42

AAG ...

KYR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
714503 54

ATG ...

MLS ...

Ribo-seq
ATG 13 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
R1E, v6-5
397383 72

CTG ...

LQR ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, MEF,
v6-5
959655 204

AGG ...

RRD ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
958868 45

CTG ...

LKY ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, MEF, v6-5
856656 33

ATG ...

MLQ ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, Liver
980995 39

CTG ...

LPP ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, Liver
857384 66

CTG ...

LKC ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Liver
1198364 105

AAG ...

KPS ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
714984 51

CTG ...

LSA ...

Ribo-seq
CTG 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, R1E,
v6-5
1196345 42

ATA ...

IHG ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1197696 123

AGG ...

RWK ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
714403 99

GTG ...

VPR ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, R1E, v6-5
712806 132

ATG ...

MWA ...

Ribo-seq
ATG moderate 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
NSC, R1E, v6-5
958590 42

ACG ...

TYQ ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
714132 48

TTG ...

LMS ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Liver, MEF,
NSC
717604 126

ATG ...

MTV ...

Ribo-seq
ATG 12 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Glioma, Liver, MEF,
MESC, R1E, v6-5
1197846 66

AGG ...

RNP ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1156474 30

TTG ...

LVE ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, v6-5
399394 90

CTG ...

LSA ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, R1E
393113 63

ATG ...

MEM ...

Ribo-seq
ATG strong 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Glioma, Liver, MEF,
MESC, v6-5
959484 54

AAG ...

KSR ...

Ribo-seq
AAG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1197189 57

AGG ...

RRP ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
716683 108

ATG ...

MFW ...

Ribo-seq
ATG weak 9 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, BMDC, E14,
Glioma, Liver, MEF,
MESC, v6-5
1196439 75

AAG ...

KLQ ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
958620 39

ATG ...

MGK ...

Ribo-seq
ATG strong 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14, Glioma,
Liver, MEF, MESC
397791 129

CTG ...

LSR ...

Ribo-seq
CTG weak 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
R1E
959613 72

AGG ...

RSL ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
1155754 42

GTG ...

VAE ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E,
v6-5
400425 93

ATG ...

MLS ...

Ribo-seq
ATG 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, R1E

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5