Transcript 130794

Transcript

ID CARD

MetamORF ID

130794

ENSMUST00000197600

Name

Usp33-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

152368430-152374987

CDS Start-stop positions

-152368849

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:170822

Aliases

9830169D19Rik,
AA409780, ENSMUSG00000025437, MGI:2159711,
NCBI:170822, OFF:Usp33, Usp33,
Vdu1

Chr 3

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
136539	99	CTG ...	LDK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	3T3, Brain, E14
130793	36	GTG ...	VAR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
132075	171	CTG ...	LEM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	3T3, Brain, E14
134730	174	CTG ...	LND ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
139579	138	GTG ...	VCN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
140319	204	GTG ...	VSI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
133218	78	GTG ...	VCE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Brain
892942	159	AGG ...	RKK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	BMDC
1507153	33	ATG ...	MEQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF

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