Transcript 1296691

Transcript

ID CARD

MetamORF ID

1296691

ENSMUST00000159126

Name

Wdr35-203

Strand

Biotype

retained_intron

Start-end positions

8974011-8991672

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAG ...

Genome browsers

UCSC

Gene

NCBI:74682

Aliases

4930459M12Rik,
4931430C06, ENSMUSG00000066643, MGI:1921932,
mKIAA1336, NCBI:74682, OFF:Wdr35,
Wdr35

Chr 12

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1847245	108	TTG ...	LLG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1298262	228	TTG ...	LVN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
25521	138	TTG ...	LKV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
24704	108	CTG ...	LCH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
25879	102	CTG ...	LKC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
24620	75	TTG ...	LTT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
25517	108	CTG ...	LSW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1131411	39	TTG ...	LGR ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
25815	39	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1605711	102	GTG ...	VEP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
25290	123	CTG ...	LKG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
25805	108	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1847457	63	CTG ...	LVP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
25259	210	GTG ...	VVY ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
24738	132	GTG ...	VVR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
25569	147	CTG ...	LGT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, R1E
24454	165	GTG ...	VFW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1344752	33	CTG ...	LCC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
1132942	51	GTG ...	VFA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
24809	99	GTG ...	VTW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1296690	30	AGG ...	RRT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1298011	48	ATC ...	IIV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
25778	87	CTG ...	LKI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E

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