Transcript 12957 | MetamORF

Transcript

ID CARD

MetamORF ID

12957

ENSMUST00000007257

Name

Clic1-201

Strand

Biotype

protein_coding

Start-end positions

35049966-35058749

CDS Start-stop positions

35050448-35058491

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:114584

Aliases

Clcp,
Clic1, ENSMUSG00000007041, G6,
MGI:2148924, NCBI:114584, OFF:Clic1

Chr 17

ORFs

49 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
38312	96	TTG ...	LPR ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, MEF, R1E, Testis
702963	99	GTG ...	VGK ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF, Neutrophil, v6-5
707369	84	GTG ...	VRP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF
36010	48	ATG ...	MPG ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, Testis, v6-5
411184	123	ATC ...	IPD ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
704248	123	CTG ...	LGV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Neutrophil, v6-5
707245	33	CTG ...	LLP ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, MEF, Neutrophil
411164	135	CTG ...	LEE ...	Ribo-seq	CTG	strong	11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, C2C12, E14, MEF, R1E, Spleen_B_cell, v6-5
411105	30	AAG ...	KNN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
411210	165	TTG ...	LGC ...	Ribo-seq	TTG	strong	13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, C2C12, E14, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
13230	204	CTG ...	LAQ ...	Ribo-seq	CTG		14	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
479793	108	GTG ...	VQK ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, NSC, R1E, Spleen_B_cell, v6-5
705162	117	GTG ...	VGC ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	sORF Upstream	3T3, MEF, Neutrophil, v6-5
956489	72	AAG ...	KGL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
1193793	39	AAG ...	KNL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
709138	132	GTG ...	VEQ ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	sORF Upstream	3T3, BMDC, MEF, Neutrophil, v6-5
955752	66	ACG ...	TAA ...	Ribo-seq	ACG	strong	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
954370	180	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
12956	33	CTG ...	LKN ...	Ribo-seq	CTG	weak	17	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
13252	132	CTG ...	LPR ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
1192799	72	ATT ...	IPW ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
480686	105	CTG ...	LPL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, Spleen_B_cell, v6-5
479286	141	CTG ...	LSL ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, MEF, R1E, Spleen_B_cell, v6-5
478594	60	GTG ...	VLE ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, MEF, Neutrophil, Spleen_B_cell, v6-5
36589	33	TTG ...	LPP ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, Testis, v6-5
708119	36	CTG ...	LGL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, Neutrophil
957695	69	AGG ...	RWC ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
482030	48	ATG ...	MSS ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, R1E, Spleen_B_cell, v6-5
422296	57	TTG ...	LER ...	Ribo-seq	TTG	strong	10	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, C2C12, MEF, Neutrophil, Spleen_B_cell, v6-5
478566	84	GTG ...	VHW ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, MEF, Neutrophil, Spleen_B_cell
1193438	81	AGG ...	RAS ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
955783	54	ACG ...	TLM ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
13250	42	GTG ...	VPS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, Skin_tumor
957245	57	AGG ...	RNS ...	Ribo-seq	AGG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
1359406	72	CTG ...	LAQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, NSC
484089	117	GTG ...	VGS ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
482177	33	CTG ...	LTA ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, R1E, Spleen_B_cell, v6-5
12869	102	ATG ...	MKP ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
478529	84	ATG ...	MRA ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
957720	156	ACG ...	TDR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
705791	51	TTG ...	LRR ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, MEF
13240	237	CTG ...	LPL ...	Ribo-seq	CTG		16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
13183	165	CTG ...	LWT ...	Ribo-seq	CTG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
390201	93	ATG ...	MAP ...	Ribo-seq	ATG		12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
13149	138	CTG ...	LYR ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, v6-5
955700	87	AAG ...	KMR ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
703020	66	CTG ...	LIG ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, MEF, v6-5
956835	111	AAG ...	KKW ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
954570	93	AGG ...	RLH ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC

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