Transcript 12825 | MetamORF

Transcript

ID CARD

MetamORF ID

12825

ENSMUST00000017975

Name

Rab5a-201

Strand

Biotype

protein_coding

Start-end positions

53479234-53507671

CDS Start-stop positions

53483913-53506429

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:271457

Aliases

2410015H04Rik,
AI663973, AU021172, ENSMUSG00000017831,
MGI:105926, NCBI:271457, nnyRab5a,
OFF:Rab5a, Rab5a

Chr 17

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
796086	240	CTG ...	LRW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
1195215	174	ACG ...	TAG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
38077	33	CTG ...	LEP ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14, NSC, Testis, v6-5
12847	48	ATG ...	MNH ...	Ribo-seq	ATG	moderate	18	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
956001	72	ATC ...	IEE ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
383735	33	ATG ...	MGY ...	Ribo-seq	ATG	strong	15	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
704575	87	ATG ...	MPV ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, NSC, R1E, v6-5
1194149	156	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
955622	180	AGG ...	RSE ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, E14
1195564	114	ACG ...	TPP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1193303	96	AGG ...	RRK ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
797367	63	GTG ...	VAE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	B_cell
710090	60	GTG ...	VAS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain
703193	39	CTG ...	LKL ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, MEF, R1E, v6-5
1193542	30	AGG ...	RST ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
38631	36	ATG ...	MPC ...	Ribo-seq	ATG	weak	21	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Testis, v6-5
379539	36	CTG ...	LLA ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, v6-5
954927	45	AGG ...	RNL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
1192434	63	AGG ...	RRV ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
795574	213	TTG ...	LVR ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14
379625	33	TTG ...	LAN ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, v6-5
712450	51	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
12922	33	CTG ...	LVQ ...	Ribo-seq	CTG	strong	16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1192808	102	AGG ...	RRR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
389905	138	GTG ...	VRR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain, E14
706818	39	CTG ...	LLL ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, v6-5
1193007	33	ATA ...	IQL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
392004	105	CTG ...	LQP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Brain
1193820	165	ACG ...	TPP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1195165	198	ACG ...	TQP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
704912	66	TTG ...	LHP ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, Liver, MEF, NSC, R1E, v6-5
39083	240	CTG ...	LEE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, E14, Spleen_B_cell, Testis
956370	51	ACG ...	TGQ ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
956471	39	AGG ...	RSN ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1194255	249	ACG ...	TQP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
797693	291	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14
1193021	225	ACG ...	TAG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
954942	51	AAG ...	KKT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF Upstream	BMDC
1195397	81	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
380382	45	TTG ...	LKY ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, v6-5
956722	75	ATT ...	INA ...	Ribo-seq	ATT	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
12824	30	GTG ...	VQT ...	Ribo-seq	GTG	weak	16	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
1193367	189	GTG ...	VRR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14

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