Transcript 12820 | MetamORF

Transcript

ID CARD

MetamORF ID

12820

ENSMUST00000024811

Name

Pim1-201

Strand

Biotype

protein_coding

Start-end positions

29490812-29496111

CDS Start-stop positions

29491144-29494747

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:18712

Aliases

ENSMUSG00000024014,
MGI:97584, NCBI:18712, OFF:Pim1,
Pim-1, Pim1

Chr 17

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1192220	207	ATC ...	IGS ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
956023	234	AGG ...	RGV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1195850	165	AGG ...	RWA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
955033	162	ATC ...	IHG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
799203	54	GTG ...	VAS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, R1E, v6-5
1190278	78	AGG ...	RWA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
701837	69	GTG ...	VDS ...	Ribo-seq	GTG	strong	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, R1E, v6-5
12977	135	TTG ...	LPQ ...	Ribo-seq	TTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
954741	147	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
954674	201	ACG ...	TAG ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
478945	120	CTG ...	LTQ ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Spleen_B_cell
1192431	171	AGG ...	RIL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1192188	141	ATA ...	IFR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
797437	159	ATG ...	MTW ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Neutrophil
1047265	132	TTG ...	LST ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
701129	36	ATG ...	MAP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, v6-5
954949	192	ATC ...	IGP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
1191501	102	AGG ...	RSP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
798076	39	CTG ...	LQR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14
1193732	66	AGG ...	RPC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
955682	210	ATC ...	IAT ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
954677	201	ACG ...	TRS ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
12819	126	CTG ...	LRG ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, MEF, Neutrophil, R1E, Skin_tumor, v6-5
1047235	123	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
1195653	189	AGG ...	RSP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
480093	42	CTG ...	LEG ...	Ribo-seq	CTG		6	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, E14, Neutrophil, Spleen_B_cell, v6-5
956224	108	AAG ...	KRR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
798855	33	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14
956687	54	ATT ...	IAT ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1193400	102	AGG ...	RTW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1194448	198	AGG ...	RSP ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
795925	132	CTG ...	LLV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, E14, Neutrophil
956620	180	TTG ...	LKK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
796218	135	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, BMDC, E14, Neutrophil
954981	132	AGG ...	RQL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
956421	114	ATC ...	ICT ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
709347	141	GTG ...	VAS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Neutrophil, R1E, v6-5
702457	42	ATG ...	MVP ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
957255	195	AAG ...	KRR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
12837	162	CTG ...	LAG ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Neutrophil, R1E, Skin_tumor, v6-5
482055	105	GTG ...	VPA ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, BMDC, E14, Spleen_B_cell, v6-5
955956	144	AAG ...	KTS ...	Ribo-seq	AAG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
797969	174	TTG ...	LGS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Neutrophil
796387	186	CTG ...	LSG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, E14, Neutrophil
1192121	75	AGG ...	RCW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
712354	120	CTG ...	LAS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Neutrophil, R1E, v6-5
703674	39	GTG ...	VPV ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Liver, R1E, v6-5

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