Transcript 127803

Transcript

ID CARD

MetamORF ID

127803

ENSMUST00000199478

Name

Anxa5-203

Strand

Biotype

protein_coding

Start-end positions

36452205-36475659

CDS Start-stop positions

-36475432

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:11747

Aliases

Anx5,
Anxa5, ENSMUSG00000027712, MGI:106008,
NCBI:11747, OFF:Anxa5, R74653

Chr 3

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
401	30	ATG ...	MLK ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	BMDC, Brain, Liver, MEF
893487	45	ATA ...	ILQ ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
100	33	ATG ...	MML ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	BMDC, Brain, E14, Liver
16792	48	CTG ...	LIL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	BMDC, Brain, E14, Liver
127802	36	TTG ...	LLR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	BMDC, Brain, Liver
894463	30	AGG ...	RSL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
133122	54	ATG ...	MLS ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	BMDC, Brain, Liver, MEF
16954	36	TTG ...	LMM ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	BMDC, Brain, Liver
17133	42	CTG ...	LQL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	BMDC, Brain, Liver, MEF
867063	114	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Liver
866906	132	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Liver
129391	57	CTG ...	LTS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	Liver
894490	42	AGG ...	RKL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
894607	57	ATA ...	IET ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC

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