Transcript 12726 | MetamORF

Transcript

ID CARD

MetamORF ID

12726

ENSMUST00000023829

Name

Cdkn1a-201

Strand

Biotype

protein_coding

Start-end positions

29093772-29100722

CDS Start-stop positions

29098408-29099393

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:12575

Aliases

CAP20,
CDKI, Cdkn1, Cdkn1a,
CIP1, ENSMUSG00000023067, mda6,
MGI:104556, NCBI:12575, OFF:Cdkn1a,
P21, p21Cip1, p21WAF,
SDI1, Waf1

Chr 17

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
12734	111	ATG ...	MRS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Skin_tumor
386805	63	TTG ...	LTS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
957697	267	ATT ...	IGV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
13081	57	TTG ...	LRC ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Skin_tumor
384999	186	CTG ...	LFR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
705560	33	GTG ...	VPL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
411274	285	GTG ...	VSE ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, C2C12, E14, MEF, NSC, v6-5
707958	36	CTG ...	LSP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
12854	138	CTG ...	LPC ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Skin_tumor
384809	135	GTG ...	VSS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
411053	48	TTG ...	LES ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, C2C12
12725	72	CTG ...	LSG ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Skin_tumor
411058	144	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
1717365	51	GTG ...	VKQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
422172	171	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
379889	198	GTG ...	VMS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, C2C12
1677596	36	ATG ...	MSR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Downstream sORF	Glioma, Liver, MEF, MESC
422235	159	AGG ...	RGI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
411284	240	ATA ...	ISR ...	Ribo-seq	ATA		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, C2C12, E14
411257	258	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
708155	48	GTG ...	VGP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
387179	201	CTG ...	LVM ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
13134	192	CTG ...	LGP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Skin_tumor
385059	120	GTG ...	VIA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
700966	66	CTG ...	LGA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
382055	195	ATG ...	MSD ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
422220	69	ATC ...	IHS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
12815	177	GTG ...	VTT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Skin_tumor
411259	273	AGG ...	RGI ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, C2C12
12967	63	CTG ...	LKI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E, Skin_tumor

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