Metam
ORF

Logo

Transcript

Transcript

ID CARD

MetamORF ID

127224

ID

ENSMUST00000119896

Name

Ssr3-202

Strand

-

Biotype

protein_coding

Start-end positions

65382030-65392553

CDS Start-stop positions

65382943-65392537

CDS Relative positions

-

Sequences

Transcript sequence

AGT ...

Gene

ID

NCBI:67437

Aliases

0610038P07Rik,
AL022999, AU022074, AW553833,
ENSMUSG00000027828, MGI:1914687, NCBI:67437,
OFF:Ssr3, Ssr3, TRAPG


Chr 3

ORFs

22 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

481 75

CTG ...

LPS ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, R1E,
Spleen_B_cell
142536 234

GTG ...

VQW ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Spleen_B_cell
508020 282

GTG ...

VGF ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, Spleen_B_cell
141992 213

GTG ...

VCP ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Spleen_B_cell
544 159

CTG ...

LKL ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, R1E,
Spleen_B_cell
1223740 129

AGG ...

RRK ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
972598 33

ATC ...

ISS ...

Ribo-seq
ATC weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
893132 114

AAG ...

KLI ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
896053 150

ATA ...

IIG ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
16671 174

TTG ...

LEN ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, E14,
Liver, R1E, Spleen_B_cell
413670 120

ACG ...

TKE ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
54167 87

CTG ...

LIM ...

Ribo-seq
CTG weak 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, R1E, Spleen_B_cell
144195 204

TTG ...

LLL ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Spleen_B_cell
51948 96

ATG ...

MKL ...

Ribo-seq
ATG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, R1E, Spleen_B_cell
13 165

ATG ...

MAY ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, Brain, C2C12,
Liver, R1E, Spleen_B_cell
972516 108

ATA ...

IIG ...

Ribo-seq
ATA 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, E14
52077 90

TTG ...

LLI ...

Ribo-seq
TTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, R1E, Spleen_B_cell
565 153

CTG ...

LII ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, MEF, R1E,
Spleen_B_cell
413563 39

ATA ...

IWI ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
896064 156

AAG ...

KLI ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
142919 198

TTG ...

LSY ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
Spleen_B_cell
135582 81

ATG ...

MKL ...

Ribo-seq
ATG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Liver, R1E, Spleen_B_cell

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5