Transcript 1269003

Transcript

ID CARD

MetamORF ID

1269003

ENSMUST00000174577

Name

Yap1-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

7934497-8004390

CDS Start-stop positions

7938429-8004390

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:22601

Aliases

AI325207,
ENSMUSG00000053110, MGI:103262, NCBI:22601,
OFF:Yap1, Yap, Yap1,
Yap65, Yki, Yorkie

Chr 9

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1387938	225	CTG ...	LTP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC
1272760	30	ATA ...	IVP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
1269002	36	CTG ...	LAG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, MEF, NSC
620039	69	CTG ...	LMM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
6187	45	CTG ...	LGQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
883874	51	ATG ...	MEG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1272927	126	AGG ...	RRP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1750862	129	TTG ...	LSQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1585838	51	ATG ...	MGA ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
1524132	63	ATG ...	MYH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
1270425	213	CTG ...	LPS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
6014	36	ATG ...	MWT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1269645	177	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
1386891	177	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC
1274425	36	ATC ...	IPA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1587189	30	GTG ...	VDE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
1273430	90	AGG ...	RGG ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1273906	216	AAG ...	KER ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1386786	60	CTG ...	LPA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC
1274219	30	ATT ...	IIS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1388108	183	CTG ...	LQL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, NSC
1274069	198	CTG ...	LRS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
616190	99	ATG ...	MAG ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF

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