Transcript 126814

Transcript

ID CARD

MetamORF ID

126814

ENSMUST00000107201

Name

Cdc42se1-204

Strand

Biotype

protein_coding

Start-end positions

95228952-95234582

CDS Start-stop positions

95232039-95233565

CDS Relative positions

Sequences

Transcript sequence

GCG ...

Genome browsers

UCSC

Gene

NCBI:57912

Aliases

1300002M12Rik,
AW558204, Cdc42se1, Cdcse1,
ENSMUSG00000046722, MGI:1889510, NCBI:57912,
OFF:Cdc42se1, SCIP1, Spec1

Chr 3

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
134200	57	GTG ...	VPH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
507546	258	CTG ...	LQR ...	Ribo-seq	CTG		7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, MEF, Neutrophil, NSC, Spleen_B_cell
54599	66	CTG ...	LPV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
53597	135	TTG ...	LLV ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative sORF Upstream	Brain, C2C12, E14, Spleen_B_cell
1219747	120	ATT ...	IST ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
52043	93	TTG ...	LTE ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
894829	144	ATT ...	IPH ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
135933	207	TTG ...	LCL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
54279	75	TTG ...	LLH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Spleen_B_cell
413489	132	AAG ...	KKT ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
130777	129	GTG ...	VSR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
129806	33	CTG ...	LNP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
127709	201	CTG ...	LPA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
52152	132	TTG ...	LVS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
504282	63	TTG ...	LPV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
506801	108	CTG ...	LPK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	Spleen_B_cell
507583	162	GTG ...	VGP ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, BMDC, MEF, Neutrophil, Spleen_B_cell
54642	78	GTG ...	VLL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
53074	60	GTG ...	VRT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, Spleen_B_cell
892765	33	ACG ...	TSP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14

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