Transcript 12413 | MetamORF

Transcript

ID CARD

MetamORF ID

12413

ENSMUST00000169184

Name

Psmd2-204

Strand

Biotype

processed_transcript

Start-end positions

20659419-20662109

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:21762

Aliases

9430095H01Rik,
AA407121, ENSMUSG00000006998, MGI:1096584,
NCBI:21762, OFF:Psmd2, Psmd2,
TEG-190, Tex190

Chr 16

ORFs

6 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
12412	141	GTG ...	VST ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Skin_tumor, Testis
12567	177	CTG ...	LKV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Skin_tumor, Testis
33664	180	GTG ...	VLK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
34925	132	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
12673	108	GTG ...	VST ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
12714	99	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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