Transcript 1233041

Transcript

ID CARD

MetamORF ID

1233041

ENSMUST00000155648

Name

Hspg2-202

Strand

Biotype

processed_transcript

Start-end positions

137569171-137570117

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:15530

Aliases

AI852380,
ENSMUSG00000028763, HSPG, Hspg2,
MGI:96257, NCBI:15530, OFF:Hspg2,
Pcn, per, Plc

Chr 4

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1379953	42	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1378091	57	CTG ...	LDL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1378455	87	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1380162	150	CTG ...	LTR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1233040	192	AAG ...	KDI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1378954	102	CTG ...	LVL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
1381216	237	CTG ...	LVT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
1381069	207	GTG ...	VAV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
1376568	96	TTG ...	LHT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1233406	186	ATC ...	IIY ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1379706	99	GTG ...	VLH ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1379737	159	GTG ...	VAT ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	E14
1379183	51	CTG ...	LQH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14

Export data