Transcript 1218041

Transcript

ID CARD

MetamORF ID

1218041

ENSMUST00000118470

Name

Skil-204

Strand

Biotype

protein_coding

Start-end positions

31095058-31122573

CDS Start-stop positions

31097331-31118613

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:20482

Aliases

ENSMUSG00000027660,
MGI:106203, NCBI:20482, OFF:Skil,
Skil, Skir, sno,
SnoN

Chr 3

ORFs

63 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
136651	39	TTG ...	LEE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1221206	51	ATA ...	IFL ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	sORF Upstream	E14
143375	72	ATG ...	MER ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1221375	45	ATT ...	IGA ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1218076	30	AGG ...	RNS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1218514	57	ATA ...	ICI ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
139498	45	ATG ...	MLR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1218946	60	ATA ...	IPA ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1218240	75	ATT ...	ICI ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
128215	93	ATG ...	MHK ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
817271	78	ATG ...	MTM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
1221499	81	ATA ...	ISI ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
17000	51	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
818252	72	ATG ...	MEM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1223028	33	AGG ...	RTG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1222637	141	ACG ...	TLP ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1218519	51	ATC ...	IGN ...	Ribo-seq	ATC	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
137866	69	ATG ...	MLC ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	E14, Glioma, Liver, MEF, MESC
749803	135	ATG ...	MLG ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
819255	54	ATG ...	MSC ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
131720	57	GTG ...	VLW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1221703	93	AAG ...	KSS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1221460	69	AAG ...	KTA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
817770	57	TTG ...	LYN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
138748	198	ATG ...	MNA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
819892	39	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1219851	81	ATC ...	IYR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
133743	51	GTG ...	VSM ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
816636	141	ATG ...	MYI ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
130781	153	ATG ...	MFS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1222312	114	AGG ...	RGV ...	Ribo-seq	AGG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1222057	30	ACG ...	TTR ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1219380	63	ATT ...	IPL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1222844	57	AGG ...	RNS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1222087	45	TTG ...	LSK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	E14
816695	72	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
819402	90	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
818107	75	ATG ...	MLR ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
538667	60	ATG ...	MFG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative sORF Upstream	E14, Glioma, Liver, MEF, MESC
1220013	54	AGG ...	RKV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1218189	129	TTG ...	LGV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
1224362	192	ATG ...	MFP ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
144507	111	ATG ...	MCV ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	sORF Upstream	E14, Glioma, Liver, MEF, MESC
138621	96	CTG ...	LKS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1219635	33	ATT ...	IHL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
508569	60	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1222684	192	CTG ...	LPL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	E14
133209	216	GTG ...	VPL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1218878	33	AGG ...	RSG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1218358	54	ATT ...	IFR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
751931	39	ATG ...	MVK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	E14, Glioma, Liver, MEF, MESC
539012	75	GTG ...	VIQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
138851	54	CTG ...	LWN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1223317	42	AGG ...	RTG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
142508	69	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	E14
132395	42	CTG ...	LWA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1223033	174	TTG ...	LHR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
538501	66	TTG ...	LSR ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	E14, MEF
1219716	78	ATT ...	IRT ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1220110	48	AAG ...	KMN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
131730	75	ATG ...	MLY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1222614	42	AGG ...	RIQ ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1223588	204	AGG ...	RKV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14

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