Transcript 12137 | MetamORF

Transcript

ID CARD

MetamORF ID

12137

ENSMUST00000143554

Name

Ets2-203

Strand

Biotype

retained_intron

Start-end positions

95702500-95712564

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGA ...

Genome browsers

UCSC

Gene

NCBI:23872

Aliases

AU022856,
ENSMUSG00000022895, Ets-2, Ets2,
MGI:95456, NCBI:23872, OFF:Ets2

Chr 16

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1622315	33	GTG ...	VGH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
371071	108	TTG ...	LLT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
374629	96	TTG ...	LLC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
371955	120	TTG ...	LTP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
12150	108	GTG ...	VER ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
12136	84	GTG ...	VAS ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
374925	114	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
369856	93	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
693229	87	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
369796	108	ATG ...	MAL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
12429	135	TTG ...	LLS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
12461	75	CTG ...	LGH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
375818	84	GTG ...	VMS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
12139	126	CTG ...	LHR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor
370840	75	GTG ...	VKI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
12338	114	CTG ...	LAV ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
695740	81	TTG ...	LES ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1621708	51	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
12419	90	GTG ...	VPV ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
375264	30	TTG ...	LWV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, v6-5
375001	33	CTG ...	LGT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF

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