Transcript 1206237

Transcript

ID CARD

MetamORF ID

1206237

ENSMUST00000145606

Name

Caprin1-210

Strand

Biotype

protein_coding

Start-end positions

103767812-103771793

CDS Start-stop positions

103768386-

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:53872

Aliases

AL022980,
Caprin-1, Caprin1, ENSMUSG00000027184,
Gpiap, Gpiap1, MGI:1858234,
Mmgpip137, NCBI:53872, OFF:Caprin1,
P137, rng105

Chr 2

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1012001	192	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
1054852	135	ATG ...	MDI ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	E14
1216691	279	AAG ...	KWN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1212307	84	ATT ...	ILE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
732169	75	GTG ...	VVI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	E14
1216097	186	ATT ...	IHS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
1214219	42	AGG ...	RLW ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	E14
1210668	36	AAG ...	KTN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
862079	51	CTG ...	LLP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	E14, MEF
1216761	168	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
1207310	99	AGG ...	RPL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1012445	228	ATG ...	MVT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1210584	60	AAG ...	KWN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1209416	69	ATT ...	IHS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
967383	90	ATA ...	ITR ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	E14
1208422	120	ATT ...	ISS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	sORF	E14
1207682	129	ATC ...	ISR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF	E14
1216909	150	CTG ...	LVT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	E14
740390	111	ATG ...	MVT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	E14
1216995	255	AAG ...	KTN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14

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