Transcript 1193 | MetamORF

Transcript

ID CARD

MetamORF ID

1193

ENSMUST00000155428

Name

Eif3i-205

Strand

Biotype

processed_transcript

Start-end positions

129595127-129600599

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:54709

Aliases

36kDa,
D4Ertd632e, Eif3i, Eif3s2,
ENSMUSG00000028798, MGI:1860763, NCBI:54709,
OFF:Eif3i, Trip1

Chr 4

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1192	75	ATG ...	MSG ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, BMDC, Brain, E14, MEF, Skin_tumor
414176	48	ATA ...	ITA ...	Ribo-seq	ATA		3	sORFs_org_Mouse	ncRNA sORF	BMDC, C2C12, E14
511212	81	ATG ...	MSL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF, NSC
156935	171	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
146326	168	CTG ...	LPS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
55712	123	CTG ...	LTP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
1230289	45	GTG ...	VWC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
512996	72	CTG ...	LAQ ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, NSC
1230496	96	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
550905	129	GTG ...	VPL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
58604	240	CTG ...	LAL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
511596	141	GTG ...	VTQ ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
56888	102	GTG ...	VWY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, MEF
547193	69	CTG ...	LCL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
1229245	78	AGG ...	RLG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1656203	132	TTG ...	LII ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1229955	39	AAG ...	KET ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
160019	75	GTG ...	VVL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
1509933	63	CTG ...	LTT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
824255	123	TTG ...	LGC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF
1654047	36	GTG ...	VDA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1226924	81	AGG ...	RAM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14

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