Transcript 11890 | MetamORF

Transcript

ID CARD

MetamORF ID

11890

ENSMUST00000089377

Name

Lgals1-201

Strand

Biotype

protein_coding

Start-end positions

78926725-78930465

CDS Start-stop positions

78926796-78930144

CDS Relative positions

Sequences

Transcript sequence

CGT ...

Genome browsers

UCSC

Gene

NCBI:16852

Aliases

AA410090,
ENSMUSG00000068220, Gal-1, Galbp,
galectin-1, L-14.5, L14,
Lect14, Lgals1, MGI:96777,
NCBI:16852, OFF:Lgals1

Chr 15

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
12000	117	TTG ...	LCV ...	Ribo-seq	TTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
949382	183	ATC ...	ILA ...	Ribo-seq	ATC		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
32838	75	CTG ...	LVE ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, Testis, v6-5
12028	141	ATG ...	MPM ...	Ribo-seq	ATG		20	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
421645	54	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
949451	153	ACG ...	TDM ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
950329	153	ATC ...	ILA ...	Ribo-seq	ATC		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
681674	147	ATG ...	MNS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	3T3, BMDC, Glioma, Liver, MEF, MESC
687745	60	GTG ...	VPT ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
421633	102	AGG ...	RKM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
32908	138	ATG ...	MSQ ...	Ribo-seq	ATG		16	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, C2C12, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Testis, v6-5
421680	183	AAG ...	KTA ...	Ribo-seq	AAG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14, MEF
1452143	147	TTG ...	LCV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
32171	57	CTG ...	LVE ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
421576	72	ATT ...	IQV ...	Ribo-seq	ATT	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, C2C12, E14
1182284	159	ACG ...	TPT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
683949	102	GTG ...	VES ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, MEF, Neutrophil, NSC
421699	129	ACG ...	TPT ...	Ribo-seq	ACG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14, MEF
421401	36	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	C2C12
365972	72	GTG ...	VEQ ...	Ribo-seq	GTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, Spleen_B_cell, v6-5
32877	66	CTG ...	LPS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, MEF, NSC, R1E, Testis, v6-5
950512	69	ATC ...	ISN ...	Ribo-seq	ATC		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF
948219	165	ATG ...	MET ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, NSC
421525	111	ATC ...	ISN ...	Ribo-seq	ATC		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14, MEF
31560	60	CTG ...	LLV ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
950003	33	AGG ...	RCA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
473420	60	CTG ...	LGN ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
32962	78	CTG ...	LLV ...	Ribo-seq	CTG		13	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, Spleen_B_cell, Testis, v6-5
947725	87	AAG ...	KFG ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
421267	213	AAG ...	KTA ...	Ribo-seq	AAG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, C2C12, E14, MEF
948202	102	CTG ...	LGN ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, MEF, NSC
1184821	33	AGG ...	RWP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
950246	45	AAG ...	KFG ...	Ribo-seq	AAG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
949129	171	ATG ...	MPM ...	Ribo-seq	ATG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, MEF, NSC
11889	135	ATG ...	MET ...	Ribo-seq	ATG		19	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
12082	96	ATG ...	MGP ...	Ribo-seq	ATG		18	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Spleen_B_cell, Testis, v6-5
30967	54	GTG ...	VEQ ...	Ribo-seq	GTG		15	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5

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