Transcript 116032

Transcript

ID CARD

MetamORF ID

116032

ENSMUST00000140950

Name

Gins1-203

Strand

Biotype

processed_transcript

Start-end positions

150909617-150926097

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:69270

Aliases

2810418N01Rik,
ENSMUSG00000027454, Gins1, Gins4,
MGI:1916520, mKIAA0186, NCBI:69270,
OFF:Gins1, PSF1

Chr 2

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
116031	39	TTG ...	LLR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
964422	66	AAG ...	KLW ...	Ribo-seq	AAG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
1055814	243	TTG ...	LLR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Neutrophil, R1E
1166012	33	ATG ...	MNK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1208229	54	TTG ...	LSA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
498923	30	TTG ...	LYE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
496694	114	TTG ...	LAV ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
103595	72	CTG ...	LIP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
496431	48	GTG ...	VSC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1680784	69	ATG ...	MDA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
494467	90	TTG ...	LLR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
969088	36	ATA ...	IVY ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
498394	54	ATG ...	MGV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1163365	93	ATG ...	MTG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E
494065	48	TTG ...	LPN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1681014	78	ATG ...	MHI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
495195	48	CTG ...	LEE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Spleen_B_cell

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