Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

1153

ID

ENSMUST00000141376

Name

Magoh-202

Strand

+

Biotype

processed_transcript

Start-end positions

107882990-107887387

CDS Start-stop positions

-

CDS Relative positions

-

Sequences

Transcript sequence

GAG ...

Gene

ID

NCBI:17149

Aliases

ENSMUSG00000028609,
Mago-m, Magoh, MGI:1330312,
Mos2, NCBI:17149, OFF:Magoh


Chr 4

ORFs

26 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

58990 45

ATG ...

MML ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
MEF, R1E, Spleen_B_cell
164332 195

ATG ...

MTV ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14
1231197 36

ATT ...

IGS ...

Ribo-seq
ATT 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
57630 72

TTG ...

LMT ...

Ribo-seq
TTG 9 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, Liver,
MEF, Neutrophil, NSC,
R1E, Spleen_B_cell
59388 75

ATG ...

MNT ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, NSC,
R1E, Spleen_B_cell
58942 33

TTG ...

LMS ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    ncRNA
    sORF
MEF, Neutrophil, R1E
165961 189

GTG ...

VKS ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14
59369 45

TTG ...

LVP ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, R1E,
Spleen_B_cell
1237 57

CTG ...

LKC ...

Ribo-seq
CTG moderate 12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell
1163 42

GTG ...

VFS ...

Ribo-seq
GTG moderate 7 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
NSC, R1E, Skin_tumor
158021 87

TTG ...

LSL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    ncRNA
    sORF
Brain, MEF, NSC,
Spleen_B_cell
900172 36

CTG ...

LIG ...

Ribo-seq
CTG moderate 6 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, Liver,
MEF, NSC, R1E
164428 168

ATG ...

MLC ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14
1377774 69

TTG ...

LVF ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF
1225771 45

ATC ...

IRK ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
1230122 69

ATT ...

ILL ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
57526 42

ATG ...

MLC ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    ncRNA
    sORF
3T3, BMDC, E14,
MEF, R1E, Spleen_B_cell
164755 171

ATG ...

MML ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14
57584 30

ATG ...

MST ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    ncRNA
    sORF
E14, MEF, Neutrophil
58127 81

TTG ...

LEM ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    ncRNA
    sORF
BMDC, E14, MEF,
NSC, R1E, Spleen_B_cell
57518 69

ATG ...

MTV ...

Ribo-seq
ATG 9 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell
56788 63

GTG ...

VKS ...

Ribo-seq
GTG 9 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14, MEF,
Neutrophil, NSC, R1E,
Spleen_B_cell
1230729 33

AAG ...

KCD ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    ncRNA
    sORF
E14
162887 198

TTG ...

LMT ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    ncRNA
    sORF
3T3, E14
1152 87

TTG ...

LRV ...

Ribo-seq
TTG moderate 12 sORFs_org_Mouse
    ncRNA
    sORF
3T3, Brain, E14,
Liver, MEF, Neutrophil,
NSC, R1E, Skin_tumor,
Spleen_B_cell
158755 93

TTG ...

LKL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    ncRNA
    sORF
MEF, NSC, Spleen_B_cell

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5