Transcript 1150515

Transcript

ID CARD

MetamORF ID

1150515

ENSMUST00000167748

Name

Slc29a1-214

Strand

Biotype

retained_intron

Start-end positions

45588868-45590111

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:63959

Aliases

1200014D21Rik,
AA407560, ENSMUSG00000023942, ENT1,
MGI:1927073, NCBI:63959, OFF:Slc29a1,
Slc29a1

Chr 17

ORFs

14 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1152098	150	CTG ...	LAI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1151678	48	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1151304	96	CTG ...	LSC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1152548	81	CTG ...	LNR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1150780	120	GTG ...	VHC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
708080	42	TTG ...	LRG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
1769762	174	GTG ...	VSS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1496208	33	CTG ...	LQS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
1150514	162	TTG ...	LGS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1151392	102	GTG ...	VVL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1151638	111	CTG ...	LRQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1151506	75	TTG ...	LAT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1150660	54	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1150599	153	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5

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