Transcript 115013

Transcript

ID CARD

MetamORF ID

115013

ENSMUST00000186966

Name

Dhx9-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

153462633-153487645

CDS Start-stop positions

153469695-153483850

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:13211

Aliases

AI326842,
Ddx9, Dhx9, ENSMUSG00000042699,
HEL-5, MGI:108177, mHEL-5,
NCBI:13211, NDHII, OFF:Dhx9,
RHA

Chr 1

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
397348	108	CTG ...	LEL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
39388	63	TTG ...	LAL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
724019	30	ATG ...	MKF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Downstream NMD sORF	Liver
661436	87	ATG ...	MAL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
41135	111	CTG ...	LYA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Liver, MEF
1677404	102	GTG ...	VQP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
368460	30	GTG ...	VEG ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF
29442	132	CTG ...	LEN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
1386248	180	CTG ...	LRD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
485466	36	TTG ...	LWM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	Liver, Spleen_B_cell
301454	33	ATG ...	MRL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
25556	168	GTG ...	VDL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver, MEF, Spleen_B_cell
38896	93	CTG ...	LAM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1402381	93	TTG ...	LDD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
30342	51	GTG ...	VCS ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF
309338	189	TTG ...	LVV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver
27365	36	CTG ...	LCS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
115012	165	TTG ...	LAY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Liver
380445	150	GTG ...	VII ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Spleen_B_cell
38042	57	CTG ...	LRT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
380074	177	CTG ...	LEA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Spleen_B_cell
350174	198	TTG ...	LSM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream NMD sORF	Brain
403753	126	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, Liver
398239	42	ATG ...	MLL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Downstream NMD sORF	Brain, Spleen_B_cell
21983	111	CTG ...	LNQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Liver
406037	210	TTG ...	LLP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Spleen_B_cell
480429	144	TTG ...	LYF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Spleen_B_cell
462288	72	TTG ...	LST ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Liver, Spleen_B_cell
26009	90	GTG ...	VFF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative NMD sORF Upstream	MEF, Spleen_B_cell
369641	201	GTG ...	VKK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Spleen_B_cell
409843	228	GTG ...	VLQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Spleen_B_cell
395879	207	CTG ...	LPV ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Spleen_B_cell
696412	78	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1412847	171	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver
715792	102	TTG ...	LSL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF

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