Transcript 1148763

Transcript

ID CARD

MetamORF ID

1148763

ENSMUST00000170097

Name

Tmem39a-212

Strand

Biotype

processed_transcript

Start-end positions

38587211-38591346

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:67846

Aliases

2610033C09Rik,
ENSMUSG00000002845, MGI:1915096, NCBI:67846,
OFF:Tmem39a, Tmem39a

Chr 16

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1149079	267	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, R1E, v6-5
1186235	174	ATA ...	IWP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1187616	171	AGG ...	RGV ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1148913	174	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1187636	54	ATG ...	MYP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1185595	201	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1149194	204	GTG ...	VAM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1185912	138	AAG ...	KWN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1187241	207	CTG ...	LNL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1188523	195	ATC ...	ILI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1148762	198	ATG ...	MRC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1146707	132	TTG ...	LKA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14

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