Transcript 1142040

Transcript

ID CARD

MetamORF ID

1142040

ENSMUST00000164920

Name

Xrcc6-205

Strand

Biotype

processed_transcript

Start-end positions

82028064-82039802

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:14375

Aliases

70kDa,
ENSMUSG00000022471, G22p1, Ku70,
MGI:95606, NCBI:14375, OFF:Xrcc6,
Xrcc6

Chr 15

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1144007	57	TTG ...	LSS ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
31029	72	GTG ...	VTA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
1180592	57	ATA ...	IIP ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1181560	75	TTG ...	LSI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
31826	90	GTG ...	VPF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
1180790	168	AAG ...	KVE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
471918	54	TTG ...	LWL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, R1E, v6-5
1182945	69	ATC ...	ILQ ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1144561	33	GTG ...	VCG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, v6-5
1143388	78	TTG ...	LCF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1143348	33	TTG ...	LCW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
1142198	84	ATG ...	MPA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF, v6-5
1142284	42	ATG ...	MPM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
1180495	69	ACG ...	TAN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1182377	183	AGG ...	RPS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1143737	33	ATG ...	MKV ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	R1E, v6-5
1179939	99	AAG ...	KRK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1180947	33	AAG ...	KRS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1183769	234	ATC ...	ILM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1182047	90	ATG ...	MSL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1142598	36	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
1183658	51	ACG ...	TSD ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1183561	198	AAG ...	KQH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1143871	48	ATG ...	MGH ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, v6-5
1181816	285	CTG ...	LEK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1182844	261	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1181114	45	AAG ...	KMK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14

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