Transcript 11412 | MetamORF

Transcript

ID CARD

MetamORF ID

11412

ENSMUST00000163242

Name

Atxn10-201

Strand

Biotype

protein_coding

Start-end positions

85336381-85463836

CDS Start-stop positions

85336465-85462923

CDS Relative positions

Sequences

Transcript sequence

TCT ...

Genome browsers

UCSC

Gene

NCBI:54138

Aliases

AI325283,
Atxn10, C77170, E46,
ENSMUSG00000016541, MGI:1859293, NCBI:54138,
OFF:Atxn10, Sca10, TEG-169,
Tex169

Chr 15

ORFs

72 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
949105	198	ATC ...	ISS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	BMDC
359007	93	ATG ...	MLC ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
31505	60	TTG ...	LSW ...	Ribo-seq	TTG	weak	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
682763	36	CTG ...	LNA ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, NSC
682826	75	CTG ...	LKT ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, R1E, v6-5
948960	84	ATG ...	MKN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14, v6-5
1181083	51	ATG ...	MTT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
365015	75	TTG ...	LPH ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, NSC, R1E, v6-5
32257	45	TTG ...	LEK ...	Ribo-seq	TTG	strong	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, Testis, v6-5
472865	90	ATG ...	MLQ ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, NSC, R1E, Spleen_B_cell, v6-5
32922	231	CTG ...	LSP ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Liver, Neutrophil, NSC, R1E, Testis
473079	66	TTG ...	LYR ...	Ribo-seq	TTG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell
32684	207	CTG ...	LLS ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
683284	51	ATG ...	MSL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, MEF, R1E, v6-5
1183682	60	ATT ...	IYG ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1180957	72	ATA ...	IRS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1181703	33	AGG ...	RSR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
358549	30	CTG ...	LFH ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, NSC, R1E, Spleen_B_cell, v6-5
1184301	78	ACG ...	TLP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
682601	33	GTG ...	VNF ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E, v6-5
356361	33	CTG ...	LKA ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
1183781	93	AAG ...	KPG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
32879	171	GTG ...	VAR ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis
683430	60	TTG ...	LLL ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, v6-5
32233	51	ATG ...	MKL ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
1182453	33	AAG ...	KWN ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
472748	57	GTG ...	VFC ...	Ribo-seq	GTG		12	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
948487	39	ATC ...	ICA ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
11411	48	GTG ...	VQE ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14, MEF, NSC, R1E, Skin_tumor, v6-5
1182104	51	ATT ...	IWF ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1180754	81	ATC ...	ISL ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
683560	57	CTG ...	LQG ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, v6-5
365049	129	GTG ...	VAV ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, NSC, R1E, v6-5
469692	39	TTG ...	LQT ...	Ribo-seq	TTG	weak	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, E14, MEF, NSC, Spleen_B_cell, v6-5
1180053	96	TTG ...	LYR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
32243	45	TTG ...	LEI ...	Ribo-seq	TTG		15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis
1180594	57	AAG ...	KLT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
688520	57	CTG ...	LLI ...	Ribo-seq	CTG	weak	10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
364805	99	TTG ...	LGP ...	Ribo-seq	TTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
361864	90	CTG ...	LCE ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
1182443	45	AAG ...	KPW ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
31187	150	GTG ...	VAR ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, NSC, R1E, Testis
358611	42	ATG ...	MWP ...	Ribo-seq	ATG	weak	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell
356119	96	TTG ...	LPH ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, NSC, R1E, v6-5
32585	66	ATG ...	MLL ...	Ribo-seq	ATG	weak	12	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, Glioma, Liver, MEF, MESC, R1E, Spleen_B_cell, Testis, v6-5
30809	30	TTG ...	LKL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, Testis, v6-5
1184378	42	AAG ...	KLT ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
362807	66	TTG ...	LLE ...	Ribo-seq	TTG	moderate	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
1184240	93	AAG ...	KPG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1181544	120	ATG ...	MLQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, E14, MEF, NSC
366230	63	ATG ...	MKN ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, R1E, v6-5
473728	81	ATG ...	MSS ...	Ribo-seq	ATG		11	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
358347	45	TTG ...	LPR ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, R1E, v6-5
1184911	96	ATC ...	IRI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
31957	63	CTG ...	LLS ...	Ribo-seq	CTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, MEF, R1E, Spleen_B_cell, Testis, v6-5
365342	45	TTG ...	LFG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, R1E, v6-5
31832	186	CTG ...	LLS ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, Brain, C2C12, E14, MEF, Neutrophil, NSC, R1E, Testis
1185038	90	ATT ...	IPS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
356526	39	CTG ...	LSF ...	Ribo-seq	CTG	moderate	15	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, Spleen_B_cell, v6-5
1183662	48	AAG ...	KHE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1182611	42	ATC ...	IPP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
687543	33	GTG ...	VGG ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
12068	39	ATG ...	MAN ...	Ribo-seq	ATG		14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, NSC, R1E, Skin_tumor, v6-5
950445	39	ATC ...	ICA ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
32295	210	CTG ...	LSP ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Brain, E14, Neutrophil, NSC, R1E, Testis
685288	54	TTG ...	LIW ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, v6-5
1180321	42	AAG ...	KTW ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1185014	48	AAG ...	KLC ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
948024	36	ATC ...	IQT ...	Ribo-seq	ATC	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
949044	36	ATG ...	MTS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, Glioma, Liver, MEF, MESC, v6-5
1183555	99	ACG ...	TLP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
367003	45	TTG ...	LEI ...	Ribo-seq	TTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell

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