Transcript 113908

Transcript

ID CARD

MetamORF ID

113908

ENSMUST00000111887

Name

Ivns1abp-203

Strand

Biotype

protein_coding

Start-end positions

151344509-151356799

CDS Start-stop positions

151350999-151355175

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:117198

Aliases

1190004M08Rik,
1700126I16Rik, AA960440, ENSMUSG00000023150,
HSPC068, Ivns1abp, MGI:2152389,
mKIAA0850, NCBI:117198, ND1,
Nd1-L, Nd1-S, NS-1,
NS1-BP, OFF:Ivns1abp

Chr 1

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
729136	72	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
45467	75	ATG ...	MNF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF Upstream	Brain, v6-5
18834	33	CTG ...	LIT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream sORF	BMDC, Brain, v6-5
409937	42	TTG ...	LKM ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
1166262	75	GTG ...	VTH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	v6-5
1130232	135	TTG ...	LYY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream sORF	v6-5
36897	36	ATG ...	MHD ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, Brain, v6-5
1132529	111	CTG ...	LLD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	v6-5
33823	39	ATG ...	MMH ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, v6-5
1148525	30	TTG ...	LSL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	sORF Upstream	v6-5
45967	99	CTG ...	LQP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, v6-5
129226	51	GTG ...	VGS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
332302	33	GTG ...	VTV ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, BMDC, Brain, v6-5
306928	48	TTG ...	LKS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, v6-5
357949	36	ATG ...	MKI ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
469942	63	ATG ...	MLL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
55296	51	ATG ...	MTQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, v6-5
1155667	57	CTG ...	LHL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
131797	39	GTG ...	VMF ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
1174546	120	TTG ...	LFQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	v6-5
789194	48	ATG ...	MET ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
143847	36	ATG ...	MFD ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
49173	81	CTG ...	LEM ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, MEF, v6-5
1128305	36	GTG ...	VTH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
306741	36	ATG ...	MIS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, v6-5
1153204	33	TTG ...	LQV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
334859	69	TTG ...	LLF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
332093	39	ATG ...	MII ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain, v6-5
1140923	30	TTG ...	LYG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
9093	45	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5

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