Transcript 1116555

Transcript

ID CARD

MetamORF ID

1116555

ENSMUST00000140803

Name

Bgn-204

Strand

Biotype

retained_intron

Start-end positions

73483639-73492382

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:12111

Aliases

BG,
Bgn, DSPG1, ENSMUSG00000031375,
MGI:88158, NCBI:12111, OFF:Bgn,
PG-S1, PGI, SLRR1A

Chr X

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
284534	252	TTG ...	LVN ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
631560	33	ATG ...	MTS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
7273	51	TTG ...	LSR ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
279004	231	CTG ...	LAL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
279673	144	CTG ...	LPS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
1118791	36	TTG ...	LPL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
990491	30	CTG ...	LPP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
89525	144	ATG ...	MMR ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
275879	252	CTG ...	LWL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
278693	195	CTG ...	LQK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
277572	45	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
89563	108	GTG ...	VSP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
281950	213	TTG ...	LPF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
630044	48	GTG ...	VAT ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
1390240	123	CTG ...	LLD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
88756	141	ATG ...	MRR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
88405	90	CTG ...	LSH ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
632488	48	CTG ...	LSF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
282322	48	GTG ...	VSF ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
1754331	51	ATG ...	MML ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
278563	204	CTG ...	LRK ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
89069	57	GTG ...	VSP ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
278880	162	CTG ...	LKT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
1754743	33	TTG ...	LFS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1754700	48	ATG ...	MLA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
281233	153	GTG ...	VPK ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
280116	234	CTG ...	LLA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
279216	177	TTG ...	LDD ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
281252	225	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
280280	258	CTG ...	LVL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
1753570	54	GTG ...	VMM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
279920	237	TTG ...	LLL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
277048	132	CTG ...	LVE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
283905	162	GTG ...	VEI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
629822	72	GTG ...	VPC ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
278164	165	CTG ...	LVE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
7137	57	ATG ...	MTT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
632577	99	ATG ...	MRR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
283314	165	CTG ...	LLM ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
1753436	48	CTG ...	LRV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
7316	39	CTG ...	LCP ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5
631151	57	ATG ...	MTF ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
280239	105	CTG ...	LDS ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, v6-5

Export data