Transcript 110648

Transcript

ID CARD

MetamORF ID

110648

ENSMUST00000188165

Name

Hdlbp-206

Strand

Biotype

protein_coding

Start-end positions

93440688-93478377

CDS Start-stop positions

-93440755

CDS Relative positions

Sequences

Transcript sequence

ATA ...

Genome browsers

UCSC

Gene

NCBI:110611

Aliases

1110005P14Rik,
AA960365, AI118566, D1Ertd101e,
ENSMUSG00000034088, Hdlbp, MGI:99256,
NCBI:110611, OFF:Hdlbp

Chr 1

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
110647	288	GTG ...	VAF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
152833	279	CTG ...	LCG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Brain
1220846	87	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	E14
148693	129	CTG ...	LTE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	E14, Liver, MEF, R1E, Spleen_B_cell
124043	84	TTG ...	LLC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF	MEF, R1E, Spleen_B_cell
146429	261	ATG ...	MPR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, Brain
121069	93	CTG ...	LTI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	MEF, R1E, Spleen_B_cell
121382	81	CTG ...	LCL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	E14, MEF, R1E, Spleen_B_cell
153489	210	CTG ...	LGR ...	Ribo-seq	CTG		10	sORFs_org_Mouse	sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, R1E

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