Transcript 110 | MetamORF

Transcript

ID CARD

MetamORF ID

110

ENSMUST00000170883

Name

Hdlbp-202

Strand

Biotype

protein_coding

Start-end positions

93405940-93478801

CDS Start-stop positions

93408173-93440755

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:110611

Aliases

1110005P14Rik,
AA960365, AI118566, D1Ertd101e,
ENSMUSG00000034088, Hdlbp, MGI:99256,
NCBI:110611, OFF:Hdlbp

Chr 1

ORFs

127 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
980619	117	ATG ...	MWW ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
541025	192	CTG ...	LGF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
1676731	195	TTG ...	LWV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
357515	120	GTG ...	VNK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
538129	165	GTG ...	VKS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF
136828	99	CTG ...	LPE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
882436	63	GTG ...	VPR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, v6-5
982967	153	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
496571	240	TTG ...	LSL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF
866425	72	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
121382	81	CTG ...	LCL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF
1680632	90	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1681210	63	CTG ...	LWL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1101833	36	ATG ...	MYP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1172783	42	CTG ...	LCG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
148693	129	CTG ...	LTE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, Brain, MEF
1126930	102	TTG ...	LWV ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
740262	108	CTG ...	LQR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, v6-5
403073	42	TTG ...	LLG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
982132	150	CTG ...	LLP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
669110	51	GTG ...	VFS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
815580	45	ATG ...	MLP ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver, MEF, R1E
745648	279	ATG ...	MRW ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, v6-5
106517	54	TTG ...	LIF ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, v6-5
14572	111	TTG ...	LTF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor, v6-5
13704	93	TTG ...	LAK ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Skin_tumor, v6-5
693742	54	ATG ...	MRW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
1157746	96	GTG ...	VSL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
853934	54	CTG ...	LAL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
163113	75	CTG ...	LRM ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, v6-5
34912	42	ATG ...	MAS ...	Ribo-seq	ATG	strong	9	sORFs_org_Mouse	Alternative sORF Upstream	3T3, BMDC, E14, MEF, NSC, R1E, v6-5
196278	48	GTG ...	VKL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
866467	93	GTG ...	VIK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, v6-5
864643	48	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
857530	57	CTG ...	LWK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
1127410	48	CTG ...	LFR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	v6-5
546197	144	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
362604	63	GTG ...	VCG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
307180	114	ATG ...	MPS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
138960	117	GTG ...	VLT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, v6-5
359923	42	GTG ...	VNG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, v6-5
109	159	ATG ...	MCL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor, v6-5
12134	135	CTG ...	LWT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, Skin_tumor, v6-5
864455	57	TTG ...	LWC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, v6-5
339464	42	GTG ...	VRT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
1136465	69	ATG ...	MFH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
861602	72	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
368410	57	TTG ...	LSS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver
134049	96	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
676459	84	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
7602	33	TTG ...	LAK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
134456	135	CTG ...	LRK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
860861	90	TTG ...	LRE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
303898	99	ATG ...	MLL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
476280	99	TTG ...	LRS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
324617	93	TTG ...	LGQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
731563	105	CTG ...	LAR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, v6-5
846774	48	TTG ...	LQQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
12449	39	TTG ...	LLL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Skin_tumor
98837	99	TTG ...	LKT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
1131169	90	TTG ...	LSR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
860737	72	GTG ...	VPR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, v6-5
13068	132	GTG ...	VKR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Skin_tumor, v6-5
128760	54	TTG ...	LGR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, v6-5
464362	96	CTG ...	LAR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, v6-5
858995	72	GTG ...	VFS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
108095	174	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
806263	48	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
888581	51	GTG ...	VWR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, v6-5
115810	78	ATG ...	MGT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF
864539	90	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, v6-5
726924	84	GTG ...	VIK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, v6-5
11625	51	CTG ...	LEP ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Skin_tumor
982264	39	ATG ...	MRK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
11323	60	GTG ...	VTV ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, Skin_tumor, v6-5
649282	66	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
150429	153	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
737832	189	CTG ...	LGR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver, MEF, v6-5
854332	63	CTG ...	LER ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
133803	90	CTG ...	LIR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF
129635	111	GTG ...	VPK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF
854872	45	CTG ...	LEA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
1699783	189	GTG ...	VKS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1695859	141	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
756	138	GTG ...	VKR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, Skin_tumor, v6-5
871551	81	GTG ...	VVA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
697602	84	CTG ...	LRP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, v6-5
860744	87	ATG ...	MKS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
472312	42	CTG ...	LLR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
660588	69	TTG ...	LRE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
857184	42	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
355733	60	CTG ...	LPE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
155248	36	ATG ...	MWW ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
330995	39	ATG ...	MRR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, v6-5
1135103	33	TTG ...	LGK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
847368	75	ATG ...	MEM ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
674418	105	ATG ...	MCY ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
372569	57	TTG ...	LSS ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, v6-5
807871	54	GTG ...	VKL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
852240	30	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
867759	60	GTG ...	VWR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, v6-5
855896	33	GTG ...	VER ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
740860	207	CTG ...	LYQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, v6-5
479889	54	TTG ...	LFL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF Upstream	v6-5
459173	51	CTG ...	LEF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
252	102	TTG ...	LLL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Skin_tumor
891815	96	ATG ...	MYQ ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1684291	120	TTG ...	LFC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
140114	81	ATG ...	MMG ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF
487878	102	CTG ...	LQR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, v6-5
735838	114	TTG ...	LVR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
888986	66	CTG ...	LKW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
735275	171	TTG ...	LWV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, MEF, v6-5
401257	105	ATG ...	MWL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver
482484	129	TTG ...	LER ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1373	99	TTG ...	LLD ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Skin_tumor
121069	93	CTG ...	LTI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
1132885	39	TTG ...	LRS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
866033	51	ATG ...	MFK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
326943	72	GTG ...	VPK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF
1695596	213	CTG ...	LGR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
16271	117	TTG ...	LTF ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Liver, MEF, Skin_tumor, v6-5
853840	78	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	Liver
124043	84	TTG ...	LLC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, MEF
99144	135	ATG ...	MTL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1161734	159	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
890614	69	ATG ...	MRL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver

Export data