Transcript 10928 | MetamORF

Transcript

ID CARD

MetamORF ID

10928

ENSMUST00000022734

Name

Dnajc3-201

Strand

Biotype

protein_coding

Start-end positions

118937932-118981702

CDS Start-stop positions

118938089-118978184

CDS Relative positions

Sequences

Transcript sequence

TAC ...

Genome browsers

UCSC

Gene

NCBI:100037258

Aliases

AA408985,
AU067833, Dnajc3, Dnajc3a,
Dnajc3b, ENSMUSG00000022136, MGI:107373,
mp58, NCBI:100037258, OFF:Dnajc3,
p58, p58IPK, Prkri

Chr 14

ORFs

47 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
465812	174	GTG ...	VDG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, E14, Neutrophil, Spleen_B_cell
946523	78	ACG ...	TPY ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
468245	36	GTG ...	VWS ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, Spleen_B_cell, v6-5
946138	42	ATA ...	ITI ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
10927	54	ATG ...	MWR ...	Ribo-seq	ATG	weak	14	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, v6-5
348965	42	ATG ...	MPK ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC
345973	48	CTG ...	LLR ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
1308181	213	ATG ...	MME ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream Overlapping sORF	E14, Glioma, Liver, MEF, MESC
944572	39	AGG ...	RIT ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
945643	60	AGG ...	RIM ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
946352	132	AAG ...	KGL ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
946173	192	ATG ...	MQR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
350603	36	TTG ...	LTK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, MEF, NSC, Spleen_B_cell
28699	54	CTG ...	LST ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, NSC, Spleen_B_cell, Testis
466507	114	CTG ...	LLF ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, Liver, Neutrophil, Spleen_B_cell
465922	51	GTG ...	VTT ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Liver, Neutrophil, Spleen_B_cell
29408	39	ATG ...	MQN ...	Ribo-seq	ATG	moderate	14	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
946280	204	AAG ...	KIL ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC, E14
28510	48	GTG ...	VFG ...	Ribo-seq	GTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
944893	57	ATA ...	IIS ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
347072	33	ATG ...	MKM ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell, v6-5
351026	72	CTG ...	LTR ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, Spleen_B_cell
347117	45	ATG ...	MKK ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC
351178	54	ATG ...	MKL ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, Spleen_B_cell
348540	30	ATG ...	MQP ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Liver, Spleen_B_cell
350430	54	ATG ...	MVT ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
352706	120	TTG ...	LLS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Spleen_B_cell
349919	72	ATG ...	MLH ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, Glioma, Liver, MEF, MESC, Spleen_B_cell
28952	57	TTG ...	LLS ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, NSC, Spleen_B_cell, Testis
351206	51	GTG ...	VTP ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, Spleen_B_cell
346799	39	TTG ...	LNW ...	Ribo-seq	TTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Neutrophil, NSC, R1E, v6-5
467810	147	TTG ...	LAA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Liver, Neutrophil, Spleen_B_cell
346929	30	TTG ...	LTV ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, Liver, MEF, Spleen_B_cell
347675	66	ATG ...	MRS ...	Ribo-seq	ATG	moderate	9	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
353710	117	CTG ...	LST ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, Spleen_B_cell
353575	36	ATG ...	MSC ...	Ribo-seq	ATG		7	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, Spleen_B_cell
348751	33	CTG ...	LKF ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, Spleen_B_cell
28794	60	GTG ...	VLL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, NSC, Spleen_B_cell, Testis
946628	42	AGG ...	RST ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
468116	150	CTG ...	LLA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Liver, Neutrophil, Spleen_B_cell
353588	87	TTG ...	LTK ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Liver, NSC, Spleen_B_cell
945650	210	ATG ...	MEK ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	BMDC
349222	60	ATG ...	MRM ...	Ribo-seq	ATG	weak	10	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell
466567	39	GTG ...	VSR ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Liver, Spleen_B_cell
30456	45	ATG ...	MAD ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, NSC, Spleen_B_cell, Testis
352208	123	GTG ...	VLL ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, Liver, MEF, NSC, Spleen_B_cell
467493	45	TTG ...	LTR ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, Neutrophil, NSC, Spleen_B_cell

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