Transcript 10901 | MetamORF

Transcript

ID CARD

MetamORF ID

10901

ENSMUST00000100339

Name

Commd6-201

Strand

Biotype

protein_coding

Start-end positions

101633766-101640686

CDS Start-stop positions

101634342-101640436

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:66200

Aliases

1110059J08Rik,
1700063H17Rik, Commd6, ENSMUSG00000075486,
MGI:1913450, NCBI:66200, OFF:Commd6

Chr 14

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
29597	42	CTG ...	LTA ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell, Testis
350915	63	CTG ...	LDL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Brain
29703	42	CTG ...	LGS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, R1E, Spleen_B_cell, Testis
350166	120	CTG ...	LIR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
946961	63	AGG ...	RSL ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
346405	45	GTG ...	VKA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
350751	99	ATG ...	MSR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
346881	99	ATG ...	MDP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Downstream sORF	Brain
343971	30	CTG ...	LGL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
344413	36	GTG ...	VLL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
945270	48	AGG ...	RSL ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
945453	36	ATT ...	IST ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
1000498	231	CTG ...	LLP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	CDS sORF	Brain, E14, Liver, MEF, NSC, R1E, v6-5
347085	81	ATG ...	MRT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream sORF	Brain
344766	33	CTG ...	LHM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
28816	60	CTG ...	LWS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	R1E, Spleen_B_cell, Testis
351640	57	CTG ...	LRF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
343768	120	ATG ...	MGE ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF Upstream	Brain
10900	30	GTG ...	VET ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E, Skin_tumor
1000271	237	GTG ...	VSL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	CDS sORF	Brain, E14, Liver, MEF, NSC, R1E, v6-5
30012	57	CTG ...	LGS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, R1E, Spleen_B_cell, Testis
30425	75	CTG ...	LWS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Spleen_B_cell, Testis
353281	69	CTG ...	LAP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
469205	213	GTG ...	VLK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	CDS sORF	Spleen_B_cell

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