Transcript 108858

Transcript

ID CARD

MetamORF ID

108858

ENSMUST00000088095

Name

Ncoa3-201

Strand

Biotype

protein_coding

Start-end positions

165992637-166073242

CDS Start-stop positions

166047475-166070143

CDS Relative positions

Sequences

Transcript sequence

AGC ...

Genome browsers

UCSC

Gene

NCBI:17979

Aliases

2010305B15Rik,
Actr, Aib1, AW321064,
bHLHe42, ENSMUSG00000027678, KAT13B,
MGI:1276535, NCBI:17979, Ncoa3,
OFF:Ncoa3, p/Cip, pCip,
Rac3, Src3, Tram-1,
Tram1

Chr 2

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
965304	93	AGG ...	RPR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
816091	120	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
965252	66	ATC ...	IKR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
497363	57	CTG ...	LSC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
970892	111	ATC ...	IRW ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
48550	30	TTG ...	LLN ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, Brain
413042	102	ATC ...	IEN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative sORF Upstream	C2C12
126321	54	ATG ...	MAA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF Upstream	BMDC
813161	66	ATG ...	MTP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
970765	108	ACG ...	TAS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
811727	165	ATG ...	MCM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
810633	81	ATG ...	MIC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
814982	72	ATG ...	MCH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
809903	75	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
121424	87	GTG ...	VSF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	BMDC
412623	39	ATC ...	IEN ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, C2C12
810992	108	GTG ...	VGR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
101865	30	ATG ...	MYP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
812155	63	CTG ...	LGR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
813315	96	ATG ...	MLC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
969970	102	GTG ...	VSF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF Upstream	BMDC
970173	72	GTG ...	VDS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
813285	57	ATG ...	MCH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
125616	63	TTG ...	LGK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	BMDC

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