Transcript 1086251

Transcript

ID CARD

MetamORF ID

1086251

ENSMUST00000137210

Name

Pcolce-207

Strand

Biotype

processed_transcript

Start-end positions

137608939-137611326

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:18542

Aliases

Astt-2,
Astt2, ENSMUSG00000029718, MGI:105099,
NCBI:18542, OFF:Pcolce, P14,
Pcolce, PCPE-1

Chr 5

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1801920	102	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1382276	45	GTG ...	VLP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
1383093	69	CTG ...	LGP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
65031	42	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
1383045	81	CTG ...	LGL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
1803786	114	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1804260	66	CTG ...	LAL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	R1E
1801911	69	TTG ...	LLA ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	R1E
1382029	54	TTG ...	LAW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
1311366	141	CTG ...	LCP ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
178969	135	CTG ...	LPL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
1801124	60	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
1660688	186	TTG ...	LRD ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
1086250	84	CTG ...	LPD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, R1E, v6-5
1664390	84	ATG ...	MLW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
2270	69	CTG ...	LRH ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
1087857	117	TTG ...	LPF ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, R1E, v6-5
904786	93	CTG ...	LPA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E, v6-5
1311513	51	TTG ...	LPW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
1890258	39	TTG ...	LDA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	R1E
1686642	192	CTG ...	LIL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
1086688	183	TTG ...	LDW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	v6-5
564287	60	GTG ...	VRV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, R1E, v6-5
1804041	150	ATG ...	MER ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	R1E

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