Transcript 1085401

Transcript

ID CARD

MetamORF ID

1085401

ENSMUST00000044535

Name

Abraxas1-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

100805192-100820943

CDS Start-stop positions

100806851-100820917

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:70681

Aliases

3830405G04Rik,
5630400M01Rik, Abraxas1, AI506069,
AL024423, AV118690, Ccdc98,
ENSMUSG00000035234, Fam175a, MGI:1917931,
NCBI:70681, OFF:Abraxas1

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1800958	144	CTG ...	LLE ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
1382795	93	CTG ...	LVF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E
61902	90	CTG ...	LGM ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, R1E, v6-5
1803111	240	GTG ...	VYS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
1805021	84	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1800727	36	CTG ...	LEH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
1804412	261	CTG ...	LTL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
1801448	141	CTG ...	LET ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
1660333	66	CTG ...	LIN ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
65716	102	GTG ...	VVT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, R1E, v6-5
170118	195	GTG ...	VVG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, v6-5
1802537	81	TTG ...	LLT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	R1E
61373	105	TTG ...	LVV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, R1E, v6-5
1802821	216	GTG ...	VPT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
1664205	39	CTG ...	LLP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1801550	270	GTG ...	VDQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	R1E
65225	72	CTG ...	LGY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, R1E
175866	192	GTG ...	VGW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14, R1E, v6-5
1664194	48	CTG ...	LWW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1660257	123	TTG ...	LFV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1087322	36	TTG ...	LSS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	v6-5
519490	117	GTG ...	VAA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	R1E, v6-5
521791	159	GTG ...	VKR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	R1E

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