Transcript 1080946

Transcript

ID CARD

MetamORF ID

1080946

ENSMUST00000150915

Name

Ssbp3-216

Strand

Biotype

processed_transcript

Start-end positions

106910701-107031069

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:72475

Aliases

2610021L12Rik,
2610200M23Rik, 5730488C10Rik, AI854733,
AW551939, ENSMUSG00000061887, LAST,
MGI:1919725, NCBI:72475, OFF:Ssbp3,
Ssbp3, SSDP1

Chr 4

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1380054	87	GTG ...	VCP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
511700	42	CTG ...	LGE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
509464	87	CTG ...	LQA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1555865	39	CTG ...	LGS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
153853	69	GTG ...	VQL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1556072	108	TTG ...	LFF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
551035	30	GTG ...	VKQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
1555280	48	GTG ...	VNR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
1378562	39	TTG ...	LQC ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
548836	42	GTG ...	VNI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
1378062	90	GTG ...	VYF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
547256	60	CTG ...	LKG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, E14
59130	30	ATG ...	MGP ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
1176547	33	GTG ...	VPS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, v6-5
1380249	96	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain

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