Transcript 10726 | MetamORF

Transcript

ID CARD

MetamORF ID

10726

ENSMUST00000022378

Name

Ero1l-201

Strand

Biotype

protein_coding

Start-end positions

45283092-45318572

CDS Start-stop positions

45286028-45318490

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:50527

Aliases

ENSMUSG00000021831,
ERO1-L, Ero1a, Ero1l,
MGI:1354385, NCBI:50527, OFF:Ero1a

Chr 14

ORFs

63 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
468093	135	GTG ...	VGG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Neutrophil, Spleen_B_cell
353146	291	ATG ...	MQF ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil
352962	126	GTG ...	VFF ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil
10742	33	CTG ...	LSD ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, E14, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, v6-5
946178	99	ATA ...	ISL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
352036	228	ATG ...	MIR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil, NSC
351351	111	ATG ...	MKF ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil
1042743	48	GTG ...	VTT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
677855	51	TTG ...	LKN ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil, v6-5
353610	42	GTG ...	VWK ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
348464	57	ATG ...	MTS ...	Ribo-seq	ATG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, Spleen_B_cell, v6-5
352889	102	CTG ...	LME ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, v6-5
345800	114	ATG ...	MSR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, MEF, Neutrophil
353096	150	GTG ...	VEE ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, Spleen_B_cell, v6-5
676334	33	CTG ...	LAC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Neutrophil
351931	255	GTG ...	VGG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Brain, MEF, Neutrophil, Spleen_B_cell
681277	66	GTG ...	VLA ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil
349777	42	ATG ...	MMI ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC, Spleen_B_cell
676726	111	TTG ...	LSV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Neutrophil
351286	33	TTG ...	LKV ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
421092	66	AAG ...	KLY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
345517	63	CTG ...	LYF ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC
466841	93	TTG ...	LDS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Neutrophil, Spleen_B_cell
1043254	84	TTG ...	LFV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, Neutrophil
945907	66	ATG ...	MQK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Neutrophil
352391	159	TTG ...	LSV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil
351889	78	ATG ...	MKS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, Neutrophil
353025	270	GTG ...	VRR ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil
352446	231	ATG ...	MMI ...	Ribo-seq	ATG		6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, Glioma, Liver, MEF, MESC, Neutrophil, NSC
344352	39	ATG ...	MGS ...	Ribo-seq	ATG	strong	5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Brain, Glioma, Liver, MEF, MESC, Neutrophil, v6-5
10725	42	GTG ...	VSK ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, Skin_tumor, v6-5
1042492	36	GTG ...	VQG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
421150	255	AAG ...	KLY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	C2C12
344618	57	CTG ...	LCR ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF
353708	132	CTG ...	LGI ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil
352328	87	CTG ...	LRA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, v6-5
352468	93	ATG ...	MSR ...	Ribo-seq	ATG		9	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, v6-5
344286	48	ATG ...	MRI ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, MEF, Neutrophil
1042448	39	ATG ...	MSQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Neutrophil
351556	120	GTG ...	VVT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, Spleen_B_cell, v6-5
353067	63	TTG ...	LAA ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil
349272	42	GTG ...	VEE ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
675713	42	TTG ...	LAA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, Neutrophil
350393	69	CTG ...	LRK ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, v6-5
343253	39	ATG ...	MIR ...	Ribo-seq	ATG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, MEF, Neutrophil, NSC
349928	117	GTG ...	VMS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Neutrophil
947212	78	ATA ...	ISL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
351278	96	GTG ...	VMS ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
352354	114	ATG ...	MQK ...	Ribo-seq	ATG		8	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil
353224	165	ATG ...	MTS ...	Ribo-seq	ATG		10	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, B_cell, BMDC, Brain, Glioma, Liver, MEF, MESC, Neutrophil, Spleen_B_cell, v6-5
679456	90	GTG ...	VQG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Neutrophil
352016	213	TTG ...	LDS ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, Spleen_B_cell
348048	141	GTG ...	VVT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil
345907	30	CTG ...	LGI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Neutrophil
786673	84	CTG ...	LGI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Neutrophil
351307	45	CTG ...	LGE ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, Spleen_B_cell
675153	45	GTG ...	VLA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, MEF, Neutrophil
348821	54	TTG ...	LAG ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, MEF, Neutrophil, v6-5
1043102	54	TTG ...	LKV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Neutrophil
352708	99	ATG ...	MEL ...	Ribo-seq	ATG		7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain, E14, MEF, Neutrophil, v6-5
352148	252	CTG ...	LYF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain, MEF, Neutrophil, NSC
347507	33	TTG ...	LLG ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, Neutrophil
945745	129	ACG ...	TTV ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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