Transcript 10723 | MetamORF

Transcript

ID CARD

MetamORF ID

10723

ENSMUST00000055698

Name

Gjb2-201

Strand

Biotype

protein_coding

Start-end positions

57098600-57104702

CDS Start-stop positions

57100069-57100749

CDS Relative positions

257-937

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:14619

Aliases

AI325222,
Cnx26, Cx26, Cxne,
ENSMUSG00000046352, Gjb-2, Gjb2,
MGI:95720, NCBI:14619, OFF:Gjb2

Chr 14

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
10785	60	ATG ...	MYA ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
11116	147	CTG ...	LQH ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
10874	93	TTG ...	LSA ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
10938	66	TTG ...	LKP ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
10968	135	TTG ...	LAL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
10959	135	TTG ...	LGH ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
11075	108	ATG ...	MSK ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Skin_tumor
10722	111	CTG ...	LLH ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
10760	75	CTG ...	LGS ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Skin_tumor
10798	45	TTG ...	LER ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Skin_tumor
10991	129	CTG ...	LQR ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
10923	72	CTG ...	LAA ...	Ribo-seq	CTG	strong	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
11019	126	CTG ...	LQE ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
11107	45	TTG ...	LHS ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF, Skin_tumor
10963	126	GTG ...	VPT ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Brain, Liver, MEF, Skin_tumor
10993	114	ATG ...	MLR ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Skin_tumor
10832	144	ATG ...	MQR ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Skin_tumor
978795	72	CTG ...	LAH ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF
10810	129	CTG ...	LPQ ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, MEF, Skin_tumor
10876	42	ATG ...	MWP ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Skin_tumor
1404301	42	GTG ...	VDL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
1403251	45	GTG ...	VVD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
849954	231	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, MEF
349861	69	GTG ...	VST ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, Liver, MEF

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