Transcript 1071226

Transcript

ID CARD

MetamORF ID

1071226

ENSMUST00000212415

Name

Cnot1-212

Strand

Biotype

nonsense_mediated_decay

Start-end positions

95730478-95739821

CDS Start-stop positions

95734130-

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:234594

Aliases

6030411K04Rik,
AA815922, Cnot1, D830048B13,
ENSMUSG00000036550, MGI:2442402, NCBI:234594,
OFF:Cnot1

Chr 8

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
612172	171	GTG ...	VYY ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5
243099	276	TTG ...	LPQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	E14, Neutrophil, v6-5
79545	66	GTG ...	VLS ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, v6-5
5047	51	TTG ...	LNV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
1104480	81	TTG ...	LPV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	v6-5
246354	114	GTG ...	VNL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
1794500	114	ATG ...	MGE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
242973	258	GTG ...	VVR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	E14, Neutrophil, v6-5
1106415	69	CTG ...	LFH ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, NSC, v6-5
242858	114	CTG ...	LLV ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	Brain, E14, Neutrophil, NSC, v6-5
1072692	39	ATG ...	MNI ...	Ribo-seq	ATG		3	sORFs_org_Mouse	NMD sORF	MEF, Neutrophil, v6-5
1072021	159	TTG ...	LNY ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	Brain, E14, Neutrophil, NSC, v6-5
247184	63	TTG ...	LSR ...	Ribo-seq	TTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
1072858	126	CTG ...	LVK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	Brain, E14, Neutrophil, NSC, v6-5
244749	267	CTG ...	LME ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, Neutrophil, v6-5
238392	144	GTG ...	VAF ...	Ribo-seq	GTG		6	sORFs_org_Mouse	NMD sORF	Brain, E14, MEF, Neutrophil, NSC, v6-5
245185	111	CTG ...	LVD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	NMD sORF	Brain, E14, Neutrophil, NSC, v6-5
249179	126	CTG ...	LRE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
247629	108	GTG ...	VDE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	NMD sORF	Brain, E14, Neutrophil, NSC, v6-5
428806	48	CTG ...	LAA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
246367	117	CTG ...	LAM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, Neutrophil, v6-5
1107331	84	GTG ...	VLP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	v6-5
241677	150	CTG ...	LEQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	E14, v6-5
1072870	255	GTG ...	VRS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	NMD sORF	E14, Neutrophil, v6-5

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